Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08000 147 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 100 / 7e-28 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT4G13850 88 / 3e-23 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT5G61030 90 / 2e-22 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT4G39260 78 / 1e-19 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT1G74230 81 / 3e-19 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT5G06210 76 / 1e-18 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47320 77 / 4e-18 RPS19 ribosomal protein S19 (.1) AT4G24770 78 / 7e-18 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 77 / 7e-18 CP31B chloroplast RNA-binding protein 31B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031534 [exp] 246 / 9e-86 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10034685 [exp] 94 / 3e-24 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10017852 [exp] 94 / 3e-24 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10021154 [exp] 93 / 8e-24 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1) Lus10022551 [exp] 88 / 3e-23 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10040519 [exp] 94 / 4e-23 AT5G61030 189 / 2e-53 glycine-rich RNA-binding protein 3 (.1) Lus10016639 [exp] 88 / 6e-23 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10032591 [exp] 85 / 6e-22 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10043158 [exp] 82 / 7e-21 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157300 [exp] 171 / 3e-56 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G319900 [exp] 98 / 3e-27 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.017G059000 [exp] 96 / 1e-26 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319800 [exp] 90 / 5e-24 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.012G061600 [exp] 92 / 1e-23 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.015G057400 [exp] 89 / 1e-22 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.006G208500 [exp] 85 / 4e-22 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G225700 [exp] 80 / 3e-20 AT3G08000 64 / 1e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G155300 [exp] 81 / 5e-20 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G160300 [exp] 77 / 4e-19 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10015146 pacid=23149487 polypeptide=Lus10015146 locus=Lus10015146.g ID=Lus10015146.BGIv1.0 annot-version=v1.0 ATGCGCAGAACTCTAACCTCCGTCGCCGGAAGAGCTTACGCAGCTGTTAATAACGCAACTTCTCCACCTGGACCCAACAGTAAACTGTTCGTTTCAGGTC TCTCATGGTCGGTGAACGAGAAATCATTGAAAGACGCGTTCTCGTCGTTCGGTGAAGTGACAGAAGTGAGGATTGCGTACGACAGAGAGAGCGGGAGGTC GAGAGGGTTCGGGTTCGTGAGCTTCACAAAAGAGGACGAAGCCATGGTTGCCAAAGATGCAATGGATGGCAAGGCATTGCTAGGTCGACCATTGAGCATA AGCTTTGCCCTCGAAAGGGTTCGTGGCGGTTCGCCAGTTGTTCTCCCTCGACTGCCTAATGCAACGAACTATCCTACTCGTTCATGA
AA sequence Show only first row Show all	>Lus10015146 pacid=23149487 polypeptide=Lus10015146 locus=Lus10015146.g ID=Lus10015146.BGIv1.0 annot-version=v1.0 MRRTLTSVAGRAYAAVNNATSPPGPNSKLFVSGLSWSVNEKSLKDAFSSFGEVTEVRIAYDRESGRSRGFGFVSFTKEDEAMVAKDAMDGKALLGRPLSI SFALERVRGGSPVVLPRLPNATNYPTRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08000			RNA-binding (RRM/RBD/RNP motif...		Lus10015146 [exp]	0	1
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021016 [exp]	1.7	0.8050
AT1G26880			Ribosomal protein L34e superfa...		Lus10042199 [exp]	4.0	0.8322
AT3G19508			unknown protein		Lus10013875 [exp]	6.6	0.7605
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10026218 [exp]	8.8	0.7234
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	9.3	0.8085
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10033907 [exp]	12.4	0.7784
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	12.5	0.7498
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10006867 [exp]	12.5	0.7975
AT2G19740			Ribosomal protein L31e family ...		Lus10018032 [exp]	19.3	0.7762
AT1G76405			unknown protein		Lus10025161 [exp]	19.6	0.7771

Compare expression of checked genes

Lus10015146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.