Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05790 717 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 587 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 575 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 358 / 6e-119 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G24318 352 / 2e-117 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G56590 347 / 1e-114 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 347 / 2e-114 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 346 / 2e-114 O-Glycosyl hydrolases family 17 protein (.1) AT3G13560 345 / 4e-114 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G16230 337 / 9e-111 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040600 [exp] 580 / 0 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 579 / 0 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 574 / 0 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 557 / 0 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10013465 [exp] 345 / 6e-114 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 343 / 7e-114 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040461 [exp] 342 / 4e-113 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 341 / 8e-113 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039179 [exp] 341 / 3e-112 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G158400 [exp] 711 / 0 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 706 / 0 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 597 / 0 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G153800 [exp] 367 / 2e-123 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 359 / 4e-120 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.009G115400 [exp] 353 / 5e-118 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 354 / 1e-117 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G108500 [exp] 354 / 2e-117 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G261800 [exp] 349 / 5e-116 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G010500 [exp] 348 / 6e-115 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10015151 pacid=23149484 polypeptide=Lus10015151 locus=Lus10015151.g ID=Lus10015151.BGIv1.0 annot-version=v1.0 ATGGAGCTTGACGCCTTGACATTCTACGGACGCCCTATTCGTTACCAACAACGTCCAAACGTTTTTTCCGTAGATGCAGGCTCAATCGGAGTCAACTATG GCAGAATCGCGGACAACCTCCCGTCGGCAACGAAAGTCGTCCAGCTCCTCAAATCTCAAGGCCTCACCAAGGTAAAGGTCTTCGACTCCGACCCATCAGT CCTCCGCTCCTTAGCTGGATCAGGTATCAAAGTCACCGTCGATCTCCCCAACGAGCTCTTAGCCTCCGCCGCCAAAAGCTCCAAATTCGCCGCCGGTTGG GTCCAGCGCAACGTCGCCGCCTACCACCCATCCACCGAGATCGAATCCATCGCCGTCGGTAACGAAGTCTTCGTCGACGCACACAACACCACCCGATTCC TAATCCAAGCAATGCGGAACATCCACCAATCCTTAGTCAAGCTAAACCTCCATTCTTCCATCAAAGTATCCTCCCCGATTGCTCTTAGCGCTCTCCAGAA CTCCTACCCTTCCTCCGCCGGCTCATTCCGCCCCGAGCTCGTCGATAACGTCTTCCGCCCAATGCTCGAGTTTCTCCGGGAGACTGGATCTTTCCTGATG GTCAACGCGTACCCATTCTTCGCGTACGAGTCAAACTCCGACGTCATCTCGTTAGATTACGCTCTGTTCAGGGAGAATCCGGGAGTAGTCGACGGTGGAA ACGGAAAACGATACTTCAGCTTATTCGACGCCCAAATCGACGCTGTATTTGCCGCAATGGACGCTTTAAAGTTTAGCGATATCCCTATGGTGGTTTCCGA GACCGGATGGCCGTCTAAGGGTGACGGAAGTGAGATCGGAGCCAGTTTAATAAACGCTGCCGCTTACAACGGAAACCTCGTCCGTCGGATCTTGACCGGT GGTGGGACTCCATTGAGACCCAAAGCGGATCTCACAGTTTACCTATTCGCTCTGTTTAACGAGGATGACAAGTTTGGCCCGACGTCGGAGAGAAACTACG GGCTTTTTTATCCCAACGAGAAGAAAGTTTACGACATTCCGTTCACTGTTGAAGGTCTAAAGCATTACAAGGAGAAAAGAGCTCCTCCGGTGACAGAGCA GCCACCGGCGAGCGGCAGTGAAGGTGGAGCGGGAGTTTCGAGGAGTACTACGAAGGACACATGGTGTGTCGCGAGTGGTGGAACTGAGGAGGAGAAGCTG CAAGCGGCATTGGACTTCGCCTGCGGCGAAGGTGGAGCCGATTGCCGGCCGATTCAGCCAGGAGCGGCGTGTTTTAGCCCCAACACGATGGAGGCGCACG CTAGCTTCGCGTTCAATAGCTACTACCAGAAGAACGAGCGCCGTGGCGGGTCCTGCTATTTCGGAGGCGCTGCGCAAGTTGTTACTGAACCACCAAGGTA TGGGAAGTGTGAGTTTCCAACAGGTTACTGA
AA sequence Show only first row Show all	>Lus10015151 pacid=23149484 polypeptide=Lus10015151 locus=Lus10015151.g ID=Lus10015151.BGIv1.0 annot-version=v1.0 MELDALTFYGRPIRYQQRPNVFSVDAGSIGVNYGRIADNLPSATKVVQLLKSQGLTKVKVFDSDPSVLRSLAGSGIKVTVDLPNELLASAAKSSKFAAGW VQRNVAAYHPSTEIESIAVGNEVFVDAHNTTRFLIQAMRNIHQSLVKLNLHSSIKVSSPIALSALQNSYPSSAGSFRPELVDNVFRPMLEFLRETGSFLM VNAYPFFAYESNSDVISLDYALFRENPGVVDGGNGKRYFSLFDAQIDAVFAAMDALKFSDIPMVVSETGWPSKGDGSEIGASLINAAAYNGNLVRRILTG GGTPLRPKADLTVYLFALFNEDDKFGPTSERNYGLFYPNEKKVYDIPFTVEGLKHYKEKRAPPVTEQPPASGSEGGAGVSRSTTKDTWCVASGGTEEEKL QAALDFACGEGGADCRPIQPGAACFSPNTMEAHASFAFNSYYQKNERRGGSCYFGGAAQVVTEPPRYGKCEFPTGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05790			O-Glycosyl hydrolases family 1...		Lus10015151 [exp]	0	1
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	2.6	0.9304
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10027967 [exp]	3.2	0.9122
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10026397 [exp]	5.3	0.9233
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10022043 [exp]	5.3	0.9200
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	6.5	0.9205
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10038004 [exp]	6.7	0.9156
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	7.1	0.9251
AT4G28230			unknown protein		Lus10018539 [exp]	8.5	0.9164
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10003080 [exp]	8.7	0.9236
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10006069 [exp]	12.6	0.9015

Compare expression of checked genes

Lus10015151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.