Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03965 112 / 2e-31 RING/U-box superfamily protein (.1) AT4G22250 106 / 6e-29 RING/U-box superfamily protein (.1) AT3G25030 90 / 2e-22 RING/U-box superfamily protein (.1.2) AT1G62370 89 / 2e-22 RING/U-box superfamily protein (.1) AT4G13100 90 / 4e-22 RING/U-box superfamily protein (.1.2.3.4.5) AT3G07120 73 / 1e-15 RING/U-box superfamily protein (.1) AT3G06140 42 / 8e-05 RING/U-box superfamily protein (.1) AT1G18660 41 / 0.0002 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT2G35330 40 / 0.0004 RING/U-box superfamily protein (.1.2) AT5G23110 40 / 0.0005 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035335 [exp] 120 / 7e-36 AT4G22250 114 / 4e-33 RING/U-box superfamily protein (.1) Lus10029993 [exp] 119 / 5e-35 AT4G03965 118 / 2e-34 RING/U-box superfamily protein (.1) Lus10038180 [exp] 74 / 7e-16 AT3G07120 122 / 6e-33 RING/U-box superfamily protein (.1) Lus10025921 [exp] 74 / 7e-16 AT3G07120 117 / 3e-31 RING/U-box superfamily protein (.1) Lus10034030 [exp] 42 / 0.0002 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10004557 [exp] 40 / 0.0005 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10000899 [exp] 39 / 0.0007 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2) Lus10010392 [exp] 39 / 0.0009 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G224200 [exp] 133 / 6e-40 AT4G03965 116 / 7e-33 RING/U-box superfamily protein (.1) Potri.014G158900 [exp] 129 / 2e-38 AT4G22250 103 / 2e-27 RING/U-box superfamily protein (.1) Potri.004G003101 [exp] 96 / 1e-24 AT4G03965 135 / 3e-39 RING/U-box superfamily protein (.1) Potri.002G243800 [exp] 89 / 2e-21 AT3G07120 191 / 3e-57 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 44 / 2e-05 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 44 / 3e-05 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.006G164516 [exp] 40 / 5e-05 AT3G46620 63 / 6e-13 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.005G093000 [exp] 41 / 0.0003 AT5G23110 5932 / 0.0 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.003G156400 [exp] 39 / 0.0007 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 39 / 0.0007 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015152 pacid=23149519 polypeptide=Lus10015152 locus=Lus10015152.g ID=Lus10015152.BGIv1.0 annot-version=v1.0 ATGGCGGGGTGGAAGAACCTGAAGCGGCGGCTGTTGTTCACGTCCTGCTGCGGCGTAGATATCTCGGAGCGAGAAGAGACAACGGTGGTGGAAGGCGGCG GAGGCGGTGGTCGGGAGACGGCGGTGATGAATCTGGCGATGGCGCTGGCGGCTGAGCGGAATTCGCGGGAAGGGAGCTATGTGGGTCCTGTTATAATCGG CGGCGGCGGAGGAGAGGATGTTAAGACGTTGATGAGGCTGATTGAGGAAACAGACGGGGAGGACGATCGGCTGTGGGCGAAGAGGAAGGAGGAGGAGGAG GAGATGTCGGAGGGAACTCGCGGCGGCGGGGGAAAGGGTGGGGATTGGGTGTGCTGCGTGTGCATGGAGAGGGATAAGGGCGCGGCGTTTATCCCCTGCG GGCATACTTTCTGTAGAGTTTGTTCGCGGGCTTTGTGGGGCCGTAGAGGGTGTTGTCCTGTTTGTAACCGTCCGATCTTGGAGGTTCTTGATATCTTTTG A
AA sequence Show only first row Show all	>Lus10015152 pacid=23149519 polypeptide=Lus10015152 locus=Lus10015152.g ID=Lus10015152.BGIv1.0 annot-version=v1.0 MAGWKNLKRRLLFTSCCGVDISEREETTVVEGGGGGGRETAVMNLAMALAAERNSREGSYVGPVIIGGGGGEDVKTLMRLIEETDGEDDRLWAKRKEEEE EMSEGTRGGGGKGGDWVCCVCMERDKGAAFIPCGHTFCRVCSRALWGRRGCCPVCNRPILEVLDIF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10025124 [exp]	2.4	0.9688
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	2.6	0.9692
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10038940 [exp]	2.6	0.9628
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	3.7	0.9689
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	4.5	0.9658
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Lus10037904 [exp]	4.9	0.9642
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10033721 [exp]	5.5	0.9611
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	5.9	0.9654
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10031621 [exp]	7.2	0.9507
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10035204 [exp]	8.5	0.9601

Compare expression of checked genes

Lus10015152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.