Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05010 460 / 3e-164 ACO4, EAT1, EFE ethylene forming enzyme, ethylene-forming enzyme (.1) AT1G12010 418 / 1e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G62380 417 / 2e-147 ATACO2, ACO2 ACC oxidase 2 (.1) AT2G19590 279 / 5e-93 ATACO1, ACO1 ACC oxidase 1 (.1) AT1G77330 266 / 6e-88 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 171 / 2e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 163 / 5e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G78550 160 / 3e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 157 / 4e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 154 / 4e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031530 [exp] 575 / 0 AT1G05010 498 / 3e-179 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10029992 [exp] 522 / 0 AT1G05010 496 / 2e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10035334 [exp] 518 / 0 AT1G05010 495 / 6e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10028678 [exp] 283 / 1e-94 AT1G77330 435 / 1e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008564 [exp] 283 / 1e-94 AT2G19590 423 / 6e-150 ACC oxidase 1 (.1) Lus10000857 [exp] 281 / 6e-94 AT1G77330 440 / 2e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 162 / 1e-46 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 159 / 5e-46 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004387 [exp] 158 / 2e-45 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159000 [exp] 498 / 2e-179 AT1G05010 464 / 8e-166 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.011G020900 [exp] 483 / 3e-173 AT1G05010 473 / 1e-169 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.004G003000 [exp] 479 / 8e-172 AT1G05010 467 / 6e-167 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.002G224100 [exp] 478 / 2e-171 AT1G05010 440 / 2e-156 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.006G151600 [exp] 296 / 5e-100 AT2G19590 462 / 2e-165 ACC oxidase 1 (.1) Potri.005G182700 [exp] 283 / 9e-95 AT1G77330 461 / 4e-165 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G078600 [exp] 281 / 5e-94 AT1G77330 455 / 1e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 182 / 9e-55 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 181 / 2e-54 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 171 / 1e-50 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10015153 pacid=23149506 polypeptide=Lus10015153 locus=Lus10015153.g ID=Lus10015153.BGIv1.0 annot-version=v1.0 ATGGAGTTCCCAGTCATCAACATGGAGAAGCTCGCCGGCGACGAGAGATCCGCCACCATGGCTCAGATCAAAGATGCCTGCGAAAACTGGGGCTTCTTTG AGGTGCTGAACCATCCAATCCAAGTGGAGCTACTCGACACGGTCGAAAAGATGACCAAGGAGCATTACAGGAAATGTATGGAGCAGAGGTTCAAGGAGCT TGTGAAGAGCAAAGGGCTCGAAGAAGTCGACTCCGAGATCAAGGACATGGATTGGGAGAGCACTTTCTTCCTCCGACACCTCCCCGATTCGAACATCAAC GACATCCCCGACCTCGAGGAAGATTACAGGAAGGTGATGAAGGAGTTCGCGGTGAAATTGGAGAAGCTGGCGGAGGAGTTGCTCGATCTGTTGTGCGAGA ATCTCGGGCTGGAGAAGGGGTACTTGAAGAAGGCCTTCTACGGATCCAAAGGGGCGCCGACTTTTGGGACGAAAGTCAGCAACTATCCTCCCTGCCCGAA GCCTGATCTCATCAAGGGGCTTCGGGCCCACACTGATGCTGGAGGCATCATCTTGTTGTTTCAGGACGATAAGGTGAGCGGACTCCAGCTTTTGAAGGAC GGGAAGTGGGTTGATGTGCCGCCAATGCACCACTCCATTGTGGTCAACCTCGGAGACCAAATCGAGGTGATTACGAATGGAAAGTACAAGAGCGTGGAGC ACAGGGTGGTGGCGCAAACAGATGGGACAAGAATGTCGATCGCATCGTTCTATAACCCTGGGAGCGACGCGGTGATCTATCCTGCACCGGAGCTCATCGA AAAAGAAGAAGAGGAAGAGAAGAAGGTTGCTACGACTTACCCTAAGTTTGTGTTTGAGGACTACATGAAGCTATACGCTGGTTTGAAGTTTGAAGCCAAG GAGCCAAGGTTTGAAGCCATGTTGAAGTCCATGGATGTGGGTCCAATTGCTACTGCTTGA
AA sequence Show only first row Show all	>Lus10015153 pacid=23149506 polypeptide=Lus10015153 locus=Lus10015153.g ID=Lus10015153.BGIv1.0 annot-version=v1.0 MEFPVINMEKLAGDERSATMAQIKDACENWGFFEVLNHPIQVELLDTVEKMTKEHYRKCMEQRFKELVKSKGLEEVDSEIKDMDWESTFFLRHLPDSNIN DIPDLEEDYRKVMKEFAVKLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGAPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD GKWVDVPPMHHSIVVNLGDQIEVITNGKYKSVEHRVVAQTDGTRMSIASFYNPGSDAVIYPAPELIEKEEEEEKKVATTYPKFVFEDYMKLYAGLKFEAK EPRFEAMLKSMDVGPIATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10015153 [exp]	0	1
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	2.2	0.9508
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	3.7	0.9475
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	4.0	0.9424
AT5G66440			unknown protein		Lus10041775 [exp]	5.5	0.9366
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	7.1	0.9457
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10042318 [exp]	7.3	0.9259
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	9.8	0.9296
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	11.7	0.9352
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026830 [exp]	12.0	0.8957
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10006059 [exp]	12.2	0.8954

Compare expression of checked genes

Lus10015153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.