Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32940 1071 / 0 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G21150 1058 / 0 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 1040 / 0 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT5G21030 922 / 0 PAZ domain-containing protein / piwi domain-containing protein (.1) AT5G43810 514 / 6e-168 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT1G48410 497 / 1e-160 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT2G27880 474 / 1e-152 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G69440 370 / 2e-113 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G31280 353 / 1e-106 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 322 / 2e-94 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035331 [exp] 1406 / 0 AT2G32940 1080 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10029989 [exp] 1218 / 0 AT2G32940 947 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10026750 [exp] 976 / 0 AT5G21150 1253 / 0.0 ARGONAUTE 9, Argonaute family protein (.1) Lus10025537 [exp] 930 / 0 AT5G21030 1234 / 0.0 PAZ domain-containing protein / piwi domain-containing protein (.1) Lus10017983 [exp] 520 / 4e-168 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031331 [exp] 515 / 6e-167 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 504 / 2e-165 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10041978 [exp] 511 / 1e-164 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10006627 [exp] 504 / 6e-164 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159400 [exp] 1304 / 0 AT2G32940 1169 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Potri.001G219700 [exp] 1134 / 0 AT2G27040 1403 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.008G010500 [exp] 1110 / 0 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.016G024200 [exp] 1078 / 0 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.006G025900 [exp] 1076 / 0 AT2G27040 1236 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.015G029000 [exp] 514 / 5e-167 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.012G037100 [exp] 512 / 2e-166 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.010G081300 [exp] 499 / 4e-162 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.008G158800 [exp] 498 / 1e-161 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.009G001500 [exp] 478 / 4e-154 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10015155 pacid=23149514 polypeptide=Lus10015155 locus=Lus10015155.g ID=Lus10015155.BGIv1.0 annot-version=v1.0 ATGGCTAAAGAAGCAACTGAATCCTCTCAGCTGCCTCCTCCTCCTCCTCCAAAACACTCTATCGTGAGTAGAAAGGGGTTTGGAACATTGGGCCGTCCGA TCCCTTTGCTTACGAACCACTATAGAGTTTCTGTTGGTGTACCAGATGCAGTGTTTTACCAATACTCTGTTTCAATTAAGTATGAAGAAGACAAACCTGT CGAAGCGAAGGGAATTGGGAGAAAGCTCATTGACAAGCTTTACCAAACCTATTCTTCGGAGTTTGATGGTAAAAGGTTTGCTTATGATGGAGAAAAAGCT CTGTACACCGTAGGTCCTTTACCTCGTAAGAAGTTGGAGTTCACCGTTGTTCTAGAGGATGCTATCGCCAAAGGTGAAAATGGGAGCCCCCAGTCAACAA GTAAGCGGTCCAAGCATTCTATTGGTTCAAAGACGTTCAAAGTTGAGGTAAATTATGCTGCCATGATCCCCATGAAGCCAATAGCTCTCGCCCTCAAAGG AGCCGACGCTGATAATGATGGTGTTCAGGATGCAGTTAGAGTGCTGGATATAATCCTCAGGCAGCAAGCAGCCAGCAGGGGGTGCCTCTTGGTGAGACAG TCATTCTTTCACGACGATTCAAGGATGTACACTGATATTGGACAGGGTGTAAGTGGACTCAGAGGATTCCATTCCAGCTTCCGTACCACTCATGGCGGCC TTTCACTGAACATGGATGTCTCGACGACCATGGTTGTAAGTCCAGGGCCAGTTATTGATTTTCTTTTGACAAATCAAAGTGTTAGAGATCCTCAGTATAT TAACTGGGACAAGGCTAGGAGAATGCTGAAGAATTTGAGGATAAAGGCAACTCACAACAATAGGGAGTTTAAAATTATAGGTTTGAGCCCGCAGCGTTGC AACCAACAACTGTTCTCCATGAAAGTGAGGAACGACGTTGGTGCAAGCGGTGAACCAGAGGAAGTTGAGCTAACTGTTTACGAGTATTTTGAACGACATC GTGGAATGCAACTAAGATATTCAGGAAACTTTCCCTGCCTTGACGTAGGCAAGCCGAAAAGGCCAAATTATCTGCCTGTGGAGCTTTGTTCATTGGTTTC TCTCCAACGCTACACGAAAGCATTATCTTCAATGCAGAGAGCGTCGTTGGTCGAAAAATCAAGGCAGAAACCTCAGGATAGAATAAGAACATTGACTGAT GCTATGGCAAAATATCGGTACGATCAGGATCCGCTGCTTGCTGAATGCGGTATCTCTATTCAAAAGGATCTGACACCAGTCAATGGCCGTGTTCTTGACA CCCCCAAGTTGAAGGTTGGTAATGACGGGGACTGCATCCCAAGTAACGGGCGCTGGAACTTCAACAACAAGACGCTTCTGAGAGCAGTTAGCATTGACAA ATGGGGTATCGTAAACTTCAGTGCTCAATGTGATATGAATAGCCTGTCCCGTGAGCTGAACAACTGCGGAAGGAAGAAGGGCATTCGTATTGAACCTCCT ATGTTCCTGATCGAAGAATCGCCTCAGTTCAGAAGAAGCAGCCCTCTAGCTAGAGTGGAAGGCATGTTCAAGCAAGTTAAAGAAAAGCTTCCGGGGACAA AGCCAGGATTTATCCTGTGCGTTTTGCCTCAGAAGAAAAATTCTGATATTTATGGGCCATGGAAGAAGAAATGCCTCAGCGATTTCGGAATTGTTACGCA GTGCATTGCTCCCCCATTTATGATTAAGGACCAATATCTTACAAATGTACTTTTGAAGATTAACGCAAAGCTTGGAGGAGTAAATTCTATGCTGGAAATT GAACAGTCTCGTCGCATTCCTTTGATAACTAAGGTTCCGACGATGATTCTGGGGATAGACGTGTCTCACGGTTCCCCTGGTCGATCAGATGTGCCATCTA TTGCTGCGGTCGTTGGATCCTTAGAATGGCCGTATATAACAAGGTACAGCGGAGCTGTGAGAACTCAGTCCCCTAAAGTGGAGATGATAGATGGTCTATA CAAGCCTTTGCCAAATGGAGAAGACGATGGTATTATGAGGAAACTGTTCGTATCTTTCTTCAAATCAAGTGGGGGCCAAAAACCACGCCAAATTGTTATA TTCAGAGATGGTGTGAGCGAGTCGCAATTCAATCAAGTGTTGAACATCGAATTGCCTCAGATTATCAAGGCCTACCAACATATGGGCGAGGTTGACGTAC CGAAATTCACAGTAATCATAGCTCAGAAGAACCACCACACCAAGTTGTTCAAGGCTCAGGGCCCTGACAATGTTCCTGCTGGAACAATCGTCGACACCAC TATCGTACATCCGAGGAACTATGACTTTTACATGTGTGCTCACAATGGCGCCATTGGTACATCAAGGCCGGCACACTACCACGTGTTGATTGACGAGATA GGCTTCTCTCCTGACGACTTGCAGAACCTCGTCCATTCCCTTTCCTACGTGTACCAGAGGAGCACAACTGCAATCTCCATCGTGGCTCCGGTTTGCTACG CACATCTTGCAGCCCAGCAGATGACTCAGTTCATGAAGTTCGATGACACGGGTTCTTCGGAGAGATTGTCGGAAGCGATGACATCTGCAGGAGCTCCTCC TGTCCCGGAGCTTCCCAGGCTGCAGGACAACGTGACGAACATGTTCTTCTGCTGA
AA sequence Show only first row Show all	>Lus10015155 pacid=23149514 polypeptide=Lus10015155 locus=Lus10015155.g ID=Lus10015155.BGIv1.0 annot-version=v1.0 MAKEATESSQLPPPPPPKHSIVSRKGFGTLGRPIPLLTNHYRVSVGVPDAVFYQYSVSIKYEEDKPVEAKGIGRKLIDKLYQTYSSEFDGKRFAYDGEKA LYTVGPLPRKKLEFTVVLEDAIAKGENGSPQSTSKRSKHSIGSKTFKVEVNYAAMIPMKPIALALKGADADNDGVQDAVRVLDIILRQQAASRGCLLVRQ SFFHDDSRMYTDIGQGVSGLRGFHSSFRTTHGGLSLNMDVSTTMVVSPGPVIDFLLTNQSVRDPQYINWDKARRMLKNLRIKATHNNREFKIIGLSPQRC NQQLFSMKVRNDVGASGEPEEVELTVYEYFERHRGMQLRYSGNFPCLDVGKPKRPNYLPVELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRIRTLTD AMAKYRYDQDPLLAECGISIQKDLTPVNGRVLDTPKLKVGNDGDCIPSNGRWNFNNKTLLRAVSIDKWGIVNFSAQCDMNSLSRELNNCGRKKGIRIEPP MFLIEESPQFRRSSPLARVEGMFKQVKEKLPGTKPGFILCVLPQKKNSDIYGPWKKKCLSDFGIVTQCIAPPFMIKDQYLTNVLLKINAKLGGVNSMLEI EQSRRIPLITKVPTMILGIDVSHGSPGRSDVPSIAAVVGSLEWPYITRYSGAVRTQSPKVEMIDGLYKPLPNGEDDGIMRKLFVSFFKSSGGQKPRQIVI FRDGVSESQFNQVLNIELPQIIKAYQHMGEVDVPKFTVIIAQKNHHTKLFKAQGPDNVPAGTIVDTTIVHPRNYDFYMCAHNGAIGTSRPAHYHVLIDEI GFSPDDLQNLVHSLSYVYQRSTTAISIVAPVCYAHLAAQQMTQFMKFDDTGSSERLSEAMTSAGAPPVPELPRLQDNVTNMFFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10015155 [exp]	0	1
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10015765 [exp]	5.7	0.9983
AT4G31880			unknown protein		Lus10026078 [exp]	6.9	0.9676
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013368 [exp]	8.0	0.9983
AT4G30770			Putative membrane lipoprotein ...		Lus10015689 [exp]	9.8	0.9983
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	11.3	0.9983
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10005081 [exp]	11.5	0.9794
					Lus10011636 [exp]	12.6	0.9983
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	13.9	0.9983
					Lus10003757 [exp]	14.6	0.8928
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	15.0	0.9983

Compare expression of checked genes

Lus10015155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.