Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04990 290 / 1e-94 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G32930 267 / 7e-85 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT5G16540 244 / 4e-77 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT3G02830 238 / 1e-74 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G18550 222 / 1e-67 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G06410 221 / 4e-67 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G47850 209 / 1e-62 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT3G48440 193 / 1e-56 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G63260 185 / 8e-54 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G12680 163 / 6e-45 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035330 [exp] 486 / 2e-170 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 478 / 2e-166 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10031528 [exp] 412 / 2e-144 AT1G04990 204 / 2e-63 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020196 [exp] 239 / 3e-74 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 236 / 3e-73 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10002880 [exp] 212 / 3e-63 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033962 [exp] 211 / 4e-63 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10034620 [exp] 206 / 2e-62 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035248 [exp] 207 / 4e-62 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159500 [exp] 395 / 5e-135 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 390 / 4e-133 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.013G086800 [exp] 241 / 3e-75 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 238 / 8e-74 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.010G022500 [exp] 215 / 5e-65 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 210 / 7e-63 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.012G092500 [exp] 195 / 4e-57 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.015G089100 [exp] 192 / 4e-56 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.008G080300 [exp] 168 / 7e-47 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.010G176300 [exp] 168 / 1e-46 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10015156 pacid=23149571 polypeptide=Lus10015156 locus=Lus10015156.g ID=Lus10015156.BGIv1.0 annot-version=v1.0 ATGCCAGATACCAACATCAGTGGCAGCAATCAGAAGCAGCAGGTGAAGAGCAATGGCGGTTCCAATCAGTCCTCTGATAACATTGATGAAGCAATTCGAA GGTTGAAGATCCAGGAGAACCAGGATCAAAATGGTGGTGGTGATGTGACCGAGCCCGGATCATACCCGGATCGACCCGGTGAGCCGGACTGTATCTATTA CTTAAGGAATGGTGTTTGTGGTTACGCTAGTAATTGCAGGTACAATCATCCCAACCAGCATGCTCCACCCGTGGCAAAGGGTTCACAGGGTGGAGATCAG GAGCTTCCTGAGAGAGCTGGAGAGCCTGATTGCGGGTACTACCTGAAAACAGGTACGTGCAAGTACGGAACGACTTGTAGATATCATCACCCTAAGGATA GGAATGGTGCTGAACCAGTCTTGTACAATCTCCTCGGTCTTCCTATGAGACAGGATGAGAAACCATGCTCGTTCTACATGCGCACCGGATCATGCAAATT CGGAGGAGCGTGCAAGTTCCATCACCCTCAACCTCCTGCTGCTGCTGCACCGCTTGAACCTGCCGGCATACCATTCTCTGGCCTCGGATCGACAGGTTCA CAGATGATCCCAAGGTTACCGTACATGTCAGCCCCTCCTCCTCGTTTCGATAGCACTCCGGCAGCATTCGCACCGGTCTACATTTCTCCTCCTTCCCAAG GAGGCTGGAACACATATGGAAACTTGAGCCCTATGGCTTCTCCACCAAGCATCTTTGGTTCAAATCTTGTTTTCAACATGGCTAGGAATCAAGGCGGATC CGGCATGTACATGCCTAGCTATAGTCTTCTTCCTCAGAGAGTTGACCAACCGGAATGCCGGCATTTCATGAACACCGGGACTTGCAGATACGGATCGGAC TGCAAGTACCATCACCCGAAGGAGAGAAGAACACCACCGCTGCTCACTATAAATGCAGCACCGGGGCTTCCCTCTCGACCGGGCCAAGCGCTATGTCCCA ACTACATTACATACGGCATATGCAAGTTCGGTACCAGCTGCAGATTCGATCACCCGTTCACCGGATATCCTTACAACTATAGCTTCACCATCCCCCCTCC CTTACCAATGCTTGATTCATCCATGGTGACTTCTTACCCAAGAATGGTGACTTCTTCACCAAGTTACAATTTCAACGGTGCAGCAAGAAACATCAAGCAA CAACATCAGATGAACAATGCAGGTACAAATAATAAGAAGACCACAGCTCCGTCTCCCACTCCGACTACCCCACCAGACGAAACCACCACTGACTGA
AA sequence Show only first row Show all	>Lus10015156 pacid=23149571 polypeptide=Lus10015156 locus=Lus10015156.g ID=Lus10015156.BGIv1.0 annot-version=v1.0 MPDTNISGSNQKQQVKSNGGSNQSSDNIDEAIRRLKIQENQDQNGGGDVTEPGSYPDRPGEPDCIYYLRNGVCGYASNCRYNHPNQHAPPVAKGSQGGDQ ELPERAGEPDCGYYLKTGTCKYGTTCRYHHPKDRNGAEPVLYNLLGLPMRQDEKPCSFYMRTGSCKFGGACKFHHPQPPAAAAPLEPAGIPFSGLGSTGS QMIPRLPYMSAPPPRFDSTPAAFAPVYISPPSQGGWNTYGNLSPMASPPSIFGSNLVFNMARNQGGSGMYMPSYSLLPQRVDQPECRHFMNTGTCRYGSD CKYHHPKERRTPPLLTINAAPGLPSRPGQALCPNYITYGICKFGTSCRFDHPFTGYPYNYSFTIPPPLPMLDSSMVTSYPRMVTSSPSYNFNGAARNIKQ QHQMNNAGTNNKKTTAPSPTPTTPPDETTTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015156 [exp]	0	1
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10035497 [exp]	2.0	0.8604
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10023286 [exp]	3.2	0.8449
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10001192 [exp]	6.7	0.8001
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	10.2	0.8423
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10039569 [exp]	11.6	0.8263
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001386 [exp]	12.2	0.8230
AT1G27210			ARM repeat superfamily protein...		Lus10036675 [exp]	12.6	0.8182
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10043168 [exp]	16.0	0.8305
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	17.9	0.8204
AT5G56890			Protein kinase superfamily pro...		Lus10027635 [exp]	18.0	0.7948

Compare expression of checked genes

Lus10015156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.