Plant FIBer expression Database

Lus10015157 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04985 213 / 1e-70 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031525
[exp]
317 / 2e-111 AT1G04985 223 / 1e-74 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G159600
[exp]
213 / 1e-70 AT1G04985 192 / 9e-63 unknown protein
PFAM info
Representative CDS sequence
>Lus10015157 pacid=23149554 polypeptide=Lus10015157 locus=Lus10015157.g ID=Lus10015157.BGIv1.0 annot-version=v1.0
ATGCAGAGGCTAAGGGGTAAAGGATCGTCGCTACTCAGTTCGATTCCCGGTTTGAAGAAGAGAGCTCACAATTCGTTCGCCGCCGTTCAGGACACTTACC
TCTCCACAAGGGATACGTTTGAGAGGCATAGAGTTGTGTTTACAGTCGGGACTTCTTTGGCATCAGTTGCCACAGCATGGATTGGATATACTCTCCGTCA
TGCTCATGAACAACGTGTTGCTCAAAGGCTTGAAGCGATTGAGAAAGCTATGGCAAACAATCAGAGTATTGAACGAGCGGAGCTTAAGAAGATGGTTGAT
CCGGGAAGCTCGCGTTATGCTGCGTATATAGCTACAGTTGGGACGACTTTTGTGATAGGGTATGGATGTGGCTGGCGAGGCGGAAAATGGTACGCGAATA
GGAAGCACAGGCAAGAGCAGATGAAGTTGCTGGGGCAGATAAAACCTCGGAGGTGGGAGTTACTTGGGAAGATCAGATCCAGAGGATTAGAATTGCAGGC
CCTAAGAAGAAGGTTATCAAGATCTAAAAGCTCCGAGACTACGACGAAAACGATCGAAAAGGGTCTGAAGAATGCACCATCTGTCTAA
AA sequence
>Lus10015157 pacid=23149554 polypeptide=Lus10015157 locus=Lus10015157.g ID=Lus10015157.BGIv1.0 annot-version=v1.0
MQRLRGKGSSLLSSIPGLKKRAHNSFAAVQDTYLSTRDTFERHRVVFTVGTSLASVATAWIGYTLRHAHEQRVAQRLEAIEKAMANNQSIERAELKKMVD
PGSSRYAAYIATVGTTFVIGYGCGWRGGKWYANRKHRQEQMKLLGQIKPRRWELLGKIRSRGLELQALRRRLSRSKSSETTTKTIEKGLKNAPSV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G04985 unknown protein Lus10015157
[exp]
0 1
AT1G20510 OPCL1 OPC-8:0 CoA ligase1 (.1.2) Lus10022336
[exp]
1.0 0.9107
AT2G13620 ATCHX15 CATION/H+ EXCHANGER 15, cation... Lus10015268
[exp]
5.1 0.8668
AT5G28540 BIP1 heat shock protein 70 (Hsp 70)... Lus10023016
[exp]
8.2 0.8639
AT4G38070 bHLH basic helix-loop-helix (bHLH) ... Lus10002649
[exp]
8.5 0.8673
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Lus10040762
[exp]
9.8 0.8594
AT1G04760 ATVAMP726 vesicle-associated membrane pr... Lus10038166
[exp]
11.1 0.9032
AT5G59140 BTB/POZ domain-containing prot... Lus10040746
[exp]
11.6 0.8725
AT1G27180 disease resistance protein (TI... Lus10017143
[exp]
17.3 0.8736
AT3G12360 ITN1 INCREASED TOLERANCE TO NACL, A... Lus10040335
[exp]
18.3 0.8692
AT5G10940 ASG2 ALTERED SEED GERMINATION 2, tr... Lus10040538
[exp]
18.5 0.8711

Lus10015157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.