Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04980 578 / 0 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 565 / 0 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT2G47470 139 / 3e-38 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT3G54960 93 / 3e-20 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT5G60640 87 / 3e-18 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G77510 85 / 1e-17 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT1G21750 84 / 2e-17 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G07960 72 / 5e-15 ATPDIL5-1 PDI-like 5-1 (.1.2.3) AT1G35620 74 / 3e-14 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT4G27080 69 / 1e-12 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031522 [exp] 777 / 0 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10035360 [exp] 533 / 0 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10034528 [exp] 248 / 5e-81 AT1G04980 268 / 8e-89 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10029954 [exp] 133 / 3e-37 AT1G04980 157 / 9e-47 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10010274 [exp] 137 / 2e-36 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10036337 [exp] 134 / 3e-35 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10034529 [exp] 125 / 4e-34 AT1G04980 130 / 1e-36 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10020691 [exp] 120 / 3e-30 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10037403 [exp] 88 / 2e-18 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160000 [exp] 634 / 0 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.014G122800 [exp] 132 / 7e-35 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 131 / 2e-34 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G082100 [exp] 93 / 3e-20 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 85 / 1e-17 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.009G013600 [exp] 84 / 3e-17 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.019G082400 [exp] 82 / 1e-16 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.009G004500 [exp] 76 / 4e-16 AT1G07960 182 / 3e-60 PDI-like 5-1 (.1.2.3) Potri.013G111400 [exp] 79 / 1e-15 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.008G040100 [exp] 74 / 7e-14 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10015160 pacid=23149504 polypeptide=Lus10015160 locus=Lus10015160.g ID=Lus10015160.BGIv1.0 annot-version=v1.0 ATGCACCGTCTACGATCGCCGTCGTCGCCATTCCTAGCGGCAGTCTCGTTGCTATTCTTTGCATGCAGTCTCTGCTCTGCACTCTACAATCCGTCGTCTC CGGTAGTTCAGCTCACTCCTTCCAACTTCAAGTCCAAGCTAGCTAACATATGTTACGAACTTCAGGTTCTGGACGCCAATGGAGTTGTTCTTGTTGAGTT CTACGCTCCTTGGTGTGGCCATTGTAAAGCTCTTACCCCAGCTTGGGAGAAAGCGGCCACTATTTTGAAAGGAGTTGCTAGAGTAGCAGCTCTTGATGCA GATGCACACAAATCTCTAGCACAGGAATATGGAATTCAAGGTTTCCCGACAATTAAGGTGTTTATTCCTGGAAAGCCGCCTGTCGATTACCAAGGGGCTA GAGAAACCAAACCAATAGTGAACTTCGCATTTAAGCAGATAAAGGCACTTCTCAGTGATCGGTTAGATGGAAACTCAACAAGCGGGTCTAGTTCTAGTTC TAGTGCCAAATCTGGACCAAATGAGTCAATAGAGTTGAACTCGCGTAACTTTGATGATTTGGTGACCAAAAGTAAAGAACTTTGGATTGTGGAGTTCTTT GCTCCTTGGTGTGGACACTGTAAAAAATTGGCTCCGGAGTGGAAGAAGGCAGCTAGTAATTTGAAGGGTAAGGTGAAGTTGGGCCATGTTGACTGTGACG CAGATAAGTCTCTGATGAGCAGGTTCAACGTCCAAGGATTTCCAACAATCTTGGTATTTGGTGCCGACAAAGATAGCCCAACTCCTTACGAGGGTGCTAG AACAGCATCAGGTATCGAGTCCTTCGCTCTGGACCAGCTCGAAACCAATGTTGCTCCACCTGAAGTGACTGAATTAACTGGCCCGGACGTCATGGAGGAG AAGTGTGGCTCAGCAGCCATCTGTTTCGTTTCTTTCCTGCCTGATATATTGGACTCCAAGGCTGAAGGACGAAACAACTATGTCTGGGCCGCTGCTGGTA AGCAACCGAATCTGGAGAACGCAGTCGGGGTAGGTGGGTACGGGTACCCAGCTCTAGTTGCCTTGAATGTCAAGAAAGGAGTCTACGCCCCACTTAAATC TGCCTACGAGCTTCAGCACGTCACAGAGTTTGTGAAGGAAGCAGGGCGAGGTGGGAAGGGGAACCTGCCATTGGAAGGAACACCGGAGATAGTCAAGACA GAGCCATGGGACGGTAAAGACGGGGTGGTCGAAGAAGAAGATGAGTTCTCCCTCGAAGAGTTAATGGGCGATCAGATCGGATCGCAAGCGGACTAA
AA sequence Show only first row Show all	>Lus10015160 pacid=23149504 polypeptide=Lus10015160 locus=Lus10015160.g ID=Lus10015160.BGIv1.0 annot-version=v1.0 MHRLRSPSSPFLAAVSLLFFACSLCSALYNPSSPVVQLTPSNFKSKLANICYELQVLDANGVVLVEFYAPWCGHCKALTPAWEKAATILKGVARVAALDA DAHKSLAQEYGIQGFPTIKVFIPGKPPVDYQGARETKPIVNFAFKQIKALLSDRLDGNSTSGSSSSSSAKSGPNESIELNSRNFDDLVTKSKELWIVEFF APWCGHCKKLAPEWKKAASNLKGKVKLGHVDCDADKSLMSRFNVQGFPTILVFGADKDSPTPYEGARTASGIESFALDQLETNVAPPEVTELTGPDVMEE KCGSAAICFVSFLPDILDSKAEGRNNYVWAAAGKQPNLENAVGVGGYGYPALVALNVKKGVYAPLKSAYELQHVTEFVKEAGRGGKGNLPLEGTPEIVKT EPWDGKDGVVEEEDEFSLEELMGDQIGSQAD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10015160 [exp]	0	1
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10015078 [exp]	1.4	0.9327
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	2.0	0.9190
AT4G29520			unknown protein		Lus10008575 [exp]	3.0	0.8821
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10033135 [exp]	6.5	0.8885
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10003651 [exp]	9.1	0.8364
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020679 [exp]	9.7	0.8917
AT1G70780			unknown protein		Lus10019143 [exp]	16.7	0.8949
AT1G34350			unknown protein		Lus10017068 [exp]	19.1	0.8728
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	19.4	0.8922
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10010594 [exp]	25.7	0.8717

Compare expression of checked genes

Lus10015160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.