Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12020 74 / 2e-16 unknown protein AT1G62422 71 / 1e-15 unknown protein AT1G24270 67 / 3e-14 unknown protein AT5G13090 62 / 8e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031521 [exp] 150 / 1e-46 AT1G62422 125 / 4e-36 unknown protein Lus10029957 [exp] 101 / 4e-27 AT1G62422 141 / 2e-42 unknown protein Lus10003131 [exp] 49 / 4e-07 AT1G24270 87 / 2e-20 unknown protein Lus10011343 [exp] 47 / 1e-06 AT5G13090 149 / 2e-43 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G001800 [exp] 81 / 5e-19 AT1G12020 135 / 3e-39 unknown protein Potri.011G022900 [exp] 78 / 4e-18 AT1G12020 115 / 2e-31 unknown protein Potri.015G099400 [exp] 66 / 4e-13 AT3G08900 114 / 5e-29 reversibly glycosylated polypeptide 3 (.1) Potri.012G101200 [exp] 63 / 3e-12 AT5G13090 93 / 2e-22 unknown protein Potri.003G168500 [exp] 52 / 2e-08 AT5G13090 100 / 1e-24 unknown protein Potri.001G059400 [exp] 50 / 7e-08 AT5G13090 119 / 8e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015161 pacid=23149503 polypeptide=Lus10015161 locus=Lus10015161.g ID=Lus10015161.BGIv1.0 annot-version=v1.0 ATGAAGAACCCTTACAAGAAAGGCAAAGTCCATCCCTCTTCCACCACCTCACCACCACCGTGGACACCGCCTCCCACAACCGCTGCCGCCTTCCTCTCCC TTCTTCCGGCCACGATCCTCGCCCTCAGCGCCGGCCTCACCCCTCAGGACAAGCAAGTCCTGGCCTACCTCATCTCATGCTGCGATCACCGGACCACTGT CTCTTATAACCAACAACAAAGAAAAAACAAAAAATCAACAGTCAGTGTTGACCACGGGCCCACGTTCGAGTGCACCTGCTTCATGTGCTACACGACGTTC TGGGCCCAGTGGGACGCCTCCTCGAACCCCCCATTGCTCCACGAGATCATCGAGGCGTCATCGGTGCGCGCGAGGAGGCCCTCACGCCCGCCACCACACG GTATGAGAGGAAGAAGAATGGGACGAGGAAGAGTAGCAGGAAGAGGCTGTCATCGTCGACGAGGAAGGTTATGGAGTCGGAGGAGGTGA
AA sequence Show only first row Show all	>Lus10015161 pacid=23149503 polypeptide=Lus10015161 locus=Lus10015161.g ID=Lus10015161.BGIv1.0 annot-version=v1.0 MKNPYKKGKVHPSSTTSPPPWTPPPTTAAAFLSLLPATILALSAGLTPQDKQVLAYLISCCDHRTTVSYNQQQRKNKKSTVSVDHGPTFECTCFMCYTTF WAQWDASSNPPLLHEIIEASSVRARRPSRPPPHGMRGRRMGRGRVAGRGCHRRRGRLWSRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62422			unknown protein		Lus10015161 [exp]	0	1
AT4G05030			Copper transport protein famil...		Lus10016059 [exp]	3.5	0.8497
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10025730 [exp]	12.1	0.8704
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10013782 [exp]	22.1	0.8604
AT5G60520			Late embryogenesis abundant (L...		Lus10015149 [exp]	23.7	0.8569
AT1G50720			Stigma-specific Stig1 family p...		Lus10043047 [exp]	27.1	0.8597
AT5G44390			FAD-binding Berberine family p...		Lus10026775 [exp]	33.0	0.8384
AT2G39040			Peroxidase superfamily protein...		Lus10021956 [exp]	33.7	0.8116
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006839 [exp]	36.3	0.8490
AT1G50720			Stigma-specific Stig1 family p...		Lus10011146 [exp]	40.3	0.8483
AT3G45070			P-loop containing nucleoside t...		Lus10031624 [exp]	52.5	0.8278

Compare expression of checked genes

Lus10015161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.