Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04570 474 / 1e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 437 / 5e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 414 / 5e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G58725 271 / 7e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 271 / 7e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 270 / 2e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58520 269 / 3e-88 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G75900 264 / 5e-86 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G06990 263 / 2e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 262 / 5e-85 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031520 [exp] 669 / 0 AT2G04570 473 / 3e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029958 [exp] 430 / 2e-151 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 280 / 3e-92 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 280 / 3e-92 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005279 [exp] 276 / 2e-90 AT5G45950 427 / 4e-150 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 274 / 4e-90 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013956 [exp] 274 / 8e-90 AT5G45950 432 / 6e-152 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 270 / 2e-88 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017279 [exp] 269 / 6e-88 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160100 [exp] 515 / 0 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 444 / 8e-157 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 439 / 1e-154 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 429 / 1e-150 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 288 / 3e-95 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 284 / 2e-93 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G051900 [exp] 275 / 2e-90 AT5G45950 430 / 3e-151 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 270 / 2e-88 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 266 / 5e-87 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.008G076600 [exp] 265 / 1e-86 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10015162 pacid=23149589 polypeptide=Lus10015162 locus=Lus10015162.g ID=Lus10015162.BGIv1.0 annot-version=v1.0 ATGGCAAAACGACACCCCGTTTCACTCCTCCTCCCATTGCTCCTCCTCCTCCTCCTCACCGTCGTCCTTGTCAAAGCGAAGGTTCCGGCAATCATCGTGT TCGGGGACTCCTCTGTGGACGCCGGGAACAACAACTTCATCCCCACCGTCGCCCGGAGCAACTTCGAGCCTTACGGCCGTGACTTCTCCGGCGGGAAGCC CACGGGGAGATTCTCCAACGGTAGGATCGCTACGGACTTTATATCCGAGGCCTTTGGGCTTAGGCCCACTGTCCCTGCCTACTTGGACCCGGCCTATAAC ATCTCCGACTTCGCCGTCGGCGTCTCTTTCGCCTCCGCCGGCACCGGTTACGACAACGCCACCTCAAATGTCCTCTCAGTGATCCCGCTATGGAAAGAGA TAGAGTATTACAAGGAGTACCAAGGCAAACTAAAGGCTCACCTAGGCGAAGCCCAAGCCAACTCGGTCCTAGCCGAGGCACTCTACGTTACAAGCATGGG CACCAACGACTTTCTCGAGAACTACTACACCATGATGCCCGGTGGCCGGGCTTCGCAGTACACTATTAGTGAGTTCCAAACCTTCCTTGTCGGGATTGCA GAGGGTTTCTACAAAGAACTCTACGGTCTCGGTGCAAGGAAGGTTTCGATTGGAGGGATTCCTCCTATGGGGTGCATGCCCCTGGAGCGAACCACCAATG TCATGGGTCGACGTGATTGTGTCGAAAGATACAATGTTGTCGCATCAGAGTTCAATTCGAAGATGAAGAATTTAACGGACAAACTTAACAGTGAACTTAT CGGTGGTCGGTTCGTGTTCTCGAATCCATATAATGCCTTGATGAGGATCATCCGACGGCCTTCCTTGTATGGGATGGCGGTGACAGCAACGGCGTGCTGT GCAACAGGGATGTTCGAGATGGGGTACGCGTGCGAGAGGAACCGAATGTTCACCTGCTCCAACGCCGACGAGTACGTGTTCTGGGATGCTTTCCATCCGA CTCAAAAGACCAACCAGATCATCGCCCAATATGTCGTCGACCATGTCCTCAAACCCTTTATGTGA
AA sequence Show only first row Show all	>Lus10015162 pacid=23149589 polypeptide=Lus10015162 locus=Lus10015162.g ID=Lus10015162.BGIv1.0 annot-version=v1.0 MAKRHPVSLLLPLLLLLLLTVVLVKAKVPAIIVFGDSSVDAGNNNFIPTVARSNFEPYGRDFSGGKPTGRFSNGRIATDFISEAFGLRPTVPAYLDPAYN ISDFAVGVSFASAGTGYDNATSNVLSVIPLWKEIEYYKEYQGKLKAHLGEAQANSVLAEALYVTSMGTNDFLENYYTMMPGGRASQYTISEFQTFLVGIA EGFYKELYGLGARKVSIGGIPPMGCMPLERTTNVMGRRDCVERYNVVASEFNSKMKNLTDKLNSELIGGRFVFSNPYNALMRIIRRPSLYGMAVTATACC ATGMFEMGYACERNRMFTCSNADEYVFWDAFHPTQKTNQIIAQYVVDHVLKPFM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10015162 [exp]	0	1
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	1.4	0.9528
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10022114 [exp]	2.8	0.9587
AT2G16630			Pollen Ole e 1 allergen and ex...		Lus10042394 [exp]	4.0	0.9363
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	4.9	0.9421
AT1G20823			RING/U-box superfamily protein...		Lus10025162 [exp]	5.2	0.9065
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10013546 [exp]	7.3	0.9364
AT3G54200			Late embryogenesis abundant (L...		Lus10035612 [exp]	7.5	0.9058
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	7.7	0.9152
AT1G31740		BGAL15	beta-galactosidase 15 (.1)		Lus10043422 [exp]	7.9	0.9144
					Lus10010783 [exp]	8.7	0.8640

Compare expression of checked genes

Lus10015162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.