Plant FIBer expression Database

Lus10015163 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G27710 136 / 2e-38 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031519
[exp]
145 / 2e-41 AT5G27710 240 / 7e-77 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G017100
[exp]
160 / 2e-47 AT5G27710 416 / 3e-146 unknown protein
PFAM info
Representative CDS sequence
>Lus10015163 pacid=23149585 polypeptide=Lus10015163 locus=Lus10015163.g ID=Lus10015163.BGIv1.0 annot-version=v1.0
ATGACGAATCCTACTTCCTCTCTCTCCTTCAGTTTAGTAGTTCTCCTCTCCATTTCTCTGACATCATCCTCACCCCCGAAATTCCTCCTCAGATCTCCAC
CCCCATCGCCGCCGCCGTCGATCCCCAGAGCAACTCCGTCGGACTTGCTCTCCTTCCTCGGCTCCCCCAGCCAGTCCTCTAGAGTCAATCCCTTGGTCTC
CCAGGAGCTCAGCTCTTGCCTCAAGTTCCTTGTCCCCTTCTCCCCTCCCCCGATCGATTCATCTGGTCGGCGATCGCTCCGCTCCGAGCGGCTTAACCGC
CGCCGAGAAGAAGAGAATCAGCTCGCCGCGTGTCCGCCCTCCCCCAGCCGATCCTCGAGCTCGCTCGTCTGGCTGTTGAATCTGGCGGCGATCCTGATTG
TATCCATCGCGCTCTCGATCCAACAGTCTTATATATTCATTCATAATCATATTCCGAGATCATACATTTGCCAGGTCCCTGATGTGGAAGGAACGGTGGA
GGATCGGTGTGAGCTGACTAGAACGCCATACGGAAGGCGCTTTATAAGTCAGGAGATAAATTCATACATGGAGTTCTTGTTCGAGCTGGTTGTTTCTCGG
GGACCTGAAATCGGGCTGAATGTGTCGCTGAGTCGATACGATTTCTTCCATGGACACCTTTTCCTCGCCACTGGAACTGGACGGCTTGGTATTCTGTAA
AA sequence
>Lus10015163 pacid=23149585 polypeptide=Lus10015163 locus=Lus10015163.g ID=Lus10015163.BGIv1.0 annot-version=v1.0
MTNPTSSLSFSLVVLLSISLTSSSPPKFLLRSPPPSPPPSIPRATPSDLLSFLGSPSQSSRVNPLVSQELSSCLKFLVPFSPPPIDSSGRRSLRSERLNR
RREEENQLAACPPSPSRSSSSLVWLLNLAAILIVSIALSIQQSYIFIHNHIPRSYICQVPDVEGTVEDRCELTRTPYGRRFISQEINSYMEFLFELVVSR
GPEIGLNVSLSRYDFFHGHLFLATGTGRLGIL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G27710 unknown protein Lus10015163
[exp]
0 1
AT1G50300 TAF15 TBP-associated factor 15 (.1) Lus10012902
[exp]
40.7 0.6466
AT5G14890 NHL domain-containing protein ... Lus10001942
[exp]
46.3 0.6365
AT5G46860 SGR3, ATVAM3, A... SHOOT GRAVITROPISM 3, ARABIDOP... Lus10040094
[exp]
56.5 0.6408
AT5G14000 NAC ANAC084 NAC domain containing protein ... Lus10032004
[exp]
80.2 0.6060
AT3G02120 hydroxyproline-rich glycoprote... Lus10032981
[exp]
82.6 0.6325
AT5G54680 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic ... Lus10043076
[exp]
113.4 0.6187
AT3G27310 PUX1 plant UBX domain-containing pr... Lus10014616
[exp]
137.4 0.6000
AT5G03670 unknown protein Lus10014378
[exp]
165.3 0.5892
AT2G37470 Histone superfamily protein (.... Lus10006484
[exp]
167.7 0.5726
AT5G04280 AtRZ-1c AtRZ-1c, RNA-binding (RRM/RBD/... Lus10038683
[exp]
174.2 0.5942

Lus10015163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.