Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05170 365 / 2e-127 Phosphoglycerate mutase family protein (.1) AT1G08940 325 / 3e-112 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031518 [exp] 504 / 0 AT3G05170 423 / 3e-150 Phosphoglycerate mutase family protein (.1) Lus10029974 [exp] 427 / 5e-152 AT3G05170 410 / 4e-145 Phosphoglycerate mutase family protein (.1) Lus10035350 [exp] 324 / 1e-111 AT3G05170 317 / 1e-108 Phosphoglycerate mutase family protein (.1) Lus10032291 [exp] 196 / 4e-62 AT3G05170 241 / 2e-79 Phosphoglycerate mutase family protein (.1) Lus10024659 [exp] 196 / 6e-62 AT3G05170 241 / 2e-79 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037900 [exp] 379 / 6e-133 AT3G05170 441 / 2e-157 Phosphoglycerate mutase family protein (.1) Potri.003G131200 [exp] 250 / 7e-82 AT3G05170 283 / 1e-94 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10015164 pacid=23149599 polypeptide=Lus10015164 locus=Lus10015164.g ID=Lus10015164.BGIv1.0 annot-version=v1.0 ATGGTAGATCCAACTCAGAACGGCGACGATCACCACCACCACCCTCACCACAGCTTACCAAAGCGTATAATTCTGGTCCGGCACGGAGAGTCCCAGGGGA ACCTGGACACGGCGGCGTACACGCACATCCCGGACCACAAGATCCCGCTCACCGAATCGGGTCGGGCGCAGGCGAGGGAGACGGGCGCCCGGCTGCAGGC GCTGATTTCGGGAGGGAGCAATTCGTCGAACGCCTGGCGGGCTTACTTCTACGTGTCGCCGTATGACAGGACGCTGTCGACGCTGAGGGAGATCGGGAAG GCGTTCGACAGGGAGAGGATAATCGGGGTTAGAGAAGAGTGTAGGGTGAGGGAGCAGGATTTCGGCAACTTTCAGGAGGCGGAGAGGATGAAGGCAATCA AGGAGGCGAGGGAGAAGTTTGGGAGGTTTTTTTTTCGGTTTCCTGAAGGGGAATCGGCTGCTGATGTCTTCGATCGCGTTTCAACTTTTCTTGAATCTCT ATGGAGAGACATTGACCTGAACAGGCTTCACCAGGACCCAGCCCATGATCTAAACCTCATAATTATAACACACGGACTAACATCTCGGGTATTCCTCATG AAGTGGTTCAAATGGACAGTAGAGCAATTCGAGCTGCTAAACAACCCCGGGAACTGCGAGTTTCGAGTTATGCAGCTAGGCACGGGAGGAGAATACAGCC TAGCAGTCCACCACACCGAGGAAGAGCTCCGAGAATGGGGTCTTTCGGAAGAGATGATCGAAGACCAGAAATGGCGAGCCACAGCTAATCGGGGGGAGTG GAACGAGAGTTGCCCCTGGTTCCTCGACGGATTCTTTGATCCTCCACAGGGCTCGAACGAAGTCGAACCATCAAGCACATGA
AA sequence Show only first row Show all	>Lus10015164 pacid=23149599 polypeptide=Lus10015164 locus=Lus10015164.g ID=Lus10015164.BGIv1.0 annot-version=v1.0 MVDPTQNGDDHHHHPHHSLPKRIILVRHGESQGNLDTAAYTHIPDHKIPLTESGRAQARETGARLQALISGGSNSSNAWRAYFYVSPYDRTLSTLREIGK AFDRERIIGVREECRVREQDFGNFQEAERMKAIKEAREKFGRFFFRFPEGESAADVFDRVSTFLESLWRDIDLNRLHQDPAHDLNLIIITHGLTSRVFLM KWFKWTVEQFELLNNPGNCEFRVMQLGTGGEYSLAVHHTEEELREWGLSEEMIEDQKWRATANRGEWNESCPWFLDGFFDPPQGSNEVEPSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05170			Phosphoglycerate mutase family...		Lus10015164 [exp]	0	1
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10012668 [exp]	2.0	0.9495
					Lus10025243 [exp]	2.4	0.9463
AT2G42760			unknown protein		Lus10029248 [exp]	3.0	0.9420
					Lus10039474 [exp]	4.5	0.9417
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10035174 [exp]	5.3	0.9324
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10042798 [exp]	6.9	0.9318
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	11.2	0.9375
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10013039 [exp]	11.5	0.9183
					Lus10006091 [exp]	12.6	0.9254
AT3G03280			unknown protein		Lus10007960 [exp]	13.1	0.9310

Compare expression of checked genes

Lus10015164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.