Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27390 307 / 2e-106 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031517 [exp] 432 / 1e-155 AT5G27390 304 / 2e-105 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026500 [exp] 327 / 4e-114 AT5G27390 302 / 2e-104 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015165 pacid=23149558 polypeptide=Lus10015165 locus=Lus10015165.g ID=Lus10015165.BGIv1.0 annot-version=v1.0 ATGGCTTTCCTCCTCCCATCCTCCTCCAATCCTCCATACTCTAAACCTAGAAACCCCACAACCCCTAAAACCCTCCTCCTGCAAACTTCCTTCCCCGAAA ACAATGTCAGTTCCCTCTCCAAGAGACAGCTCTTGCTCAGAACAGCTTCACTCTGCCTAGTCACTCTACCTGCAGCTCAAACCCTTGCTGCTCCAAAGCC TGCAACTTTCTCAGGAATCGCCAACACCAGAGCTTGGTTCCAGTATTTTGGAAGTGGGTTCTCCATCAGGATCCCTCCCCAGTTCCAAGACATGACTGAG CCTGAGGATTACAATGCTGGGCTGTCTCTCTATGGCGACAGAGCCAAAGTTAAGACCTTTGCTGCTCGTTTTGAGTCTGCTGATGGGTCTGAAGTTGTTA GTGTCGTAATTAAGCCGACCAATCAACTCAAGATCACCTTCTTAGAGGCTAAAGATGTTAGTGATTTAGGTTCCTTAAAGGAGGCAGCAAAGATCTTCGT TCCCGCTGGATCGACTTTATTCTCCGCGAGAACGATCAAAATAAAGGAAGAAGAAGGCCTCAGGAACTATTACTTCTACGAATTCGGCCGATATGATCAG CATGTGGCGCTCATGGCCGCAGTCAACAGTGGAAAGGCAATCATTGCTGGAGCAGCAGCTCCCCAGGAGAAATGGGACGACGATGGAGTCAAACTTCGTT CGGCTGCTATTTCGATGACGGTTCTGTAA
AA sequence Show only first row Show all	>Lus10015165 pacid=23149558 polypeptide=Lus10015165 locus=Lus10015165.g ID=Lus10015165.BGIv1.0 annot-version=v1.0 MAFLLPSSSNPPYSKPRNPTTPKTLLLQTSFPENNVSSLSKRQLLLRTASLCLVTLPAAQTLAAPKPATFSGIANTRAWFQYFGSGFSIRIPPQFQDMTE PEDYNAGLSLYGDRAKVKTFAARFESADGSEVVSVVIKPTNQLKITFLEAKDVSDLGSLKEAAKIFVPAGSTLFSARTIKIKEEEGLRNYYFYEFGRYDQ HVALMAAVNSGKAIIAGAAAPQEKWDDDGVKLRSAAISMTVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	0	1
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10024430 [exp]	1.4	0.9521
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Lus10020901 [exp]	2.6	0.9195
AT4G15510			Photosystem II reaction center...		Lus10000614 [exp]	2.8	0.9488
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	3.5	0.9318
AT4G34290			SWIB/MDM2 domain superfamily p...		Lus10002106 [exp]	5.5	0.9160
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10025302 [exp]	7.1	0.9213
AT3G18680			Amino acid kinase family prote...		Lus10020884 [exp]	8.9	0.9278
AT2G38025			Cysteine proteinases superfami...		Lus10027758 [exp]	9.2	0.9072
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003674 [exp]	9.2	0.9132
AT1G74710		ATICS1, SID2, E...	SALICYLIC ACID INDUCTION DEFIC...		Lus10023622 [exp]	9.5	0.8961

Compare expression of checked genes

Lus10015165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.