Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27400 377 / 1e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G27410 362 / 5e-118 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT4G35987 74 / 1e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G73320 63 / 7e-11 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G63855 59 / 3e-10 Putative methyltransferase family protein (.1.2.3) AT2G26810 56 / 9e-09 Putative methyltransferase family protein (.1.2.3) AT1G79915 54 / 6e-08 Putative methyltransferase family protein (.1) AT5G44170 47 / 8e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G49560 46 / 2e-05 Putative methyltransferase family protein (.1) AT5G01470 41 / 0.0005 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031516 [exp] 587 / 0 AT5G27400 364 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028415 [exp] 68 / 4e-13 AT1G63855 248 / 2e-84 Putative methyltransferase family protein (.1.2.3) Lus10041869 [exp] 68 / 4e-13 AT1G63855 255 / 8e-87 Putative methyltransferase family protein (.1.2.3) Lus10031894 [exp] 65 / 1e-11 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10041898 [exp] 55 / 6e-08 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10028446 [exp] 52 / 2e-07 AT4G35987 402 / 6e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10035886 [exp] 50 / 1e-06 AT1G79915 291 / 1e-97 Putative methyltransferase family protein (.1) Lus10024993 [exp] 44 / 0.0002 AT2G26200 726 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025778 [exp] 42 / 0.0004 AT1G79915 272 / 2e-89 Putative methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039000 [exp] 350 / 4e-119 AT5G27400 361 / 6e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G109000 [exp] 64 / 9e-12 AT1G63855 261 / 5e-89 Putative methyltransferase family protein (.1.2.3) Potri.017G153900 [exp] 63 / 3e-11 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.009G068400 [exp] 62 / 5e-11 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.017G017000 [exp] 54 / 3e-08 AT5G44170 316 / 3e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G148200 [exp] 52 / 9e-08 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G057000 [exp] 50 / 1e-06 AT4G35987 410 / 5e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G181200 [exp] 44 / 0.0001 AT1G79915 308 / 4e-104 Putative methyltransferase family protein (.1) Potri.006G100100 [exp] 41 / 0.0007 AT5G01470 338 / 4e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10015166 pacid=23149588 polypeptide=Lus10015166 locus=Lus10015166.g ID=Lus10015166.BGIv1.0 annot-version=v1.0 ATGGAGCTTGAACCAAACTGCCCTCCAGGGCAGCACCTGGTAGCCGCCTTCCTCGCCATGGAGCCTTCCGATTGTCTAATCTCCATTGCCAGGGAGAGTG GAGGGCTGCTTTCAGAGCAAGTTCAAAGATTCATATGGGAAAACTGCATAAACCAAGCTGCTGCTATAGGGAATGAGCCTTACATGAAGAAGTTTGTGAA GAAGCTTATTGTTGAGATAGAGTCAAGTCATGGCAATGTGTTGGATGAATTGTATGAACAGTATGGCTGTTATATGACCTCATTAAAGGAGGAAAGCTTA AGGGCCTGCAAGCACATTTCTTTCCTCTTCCCAAATGATTATGCTGAGCTTTCGAGCTGTCCCGAGTCGCGAAAGTTGGTGGTTCCTCTCAATTGCTCAC TTAACATGCTTGAAGGAGACACTGGGTGTTCAGTATGGCCGTCAAGTCTGTATTTGTCGGAGTTCATACTTTCATTTCCTGAGAGATTCTCCGGTAAATC ATGTTTCGAGGTTGGTTCTGGTGTTGGATTGGTCGGAATTTGTCTCTCTCAGGTCAAAGCTTCCAAGGTTGTACTAACTGATGGTGATCTGTCGACTTTG GCTAACATGAAACTCAACTTGGAGTTGAACCAATGTCCCCAAGATCGAAACTTGGTGAAATGCATCCATCTGCCATGGGAATCTGCATCCGAAACACAAC TGCAATCCTTCGCTCCCGACATAGTCTTAGGTGCTGATGTAATCTACGACCCATCATGCATCCCCGATCTCGTTAGAGTACTCTCTACCCTTCTGAAGAA AGGAGCTATGGGATATATTGCTTCAGTGATCAGAAACGTCAACACCTTCAACTGTTTCCTAAGCGTTGCAGAGAAGGCTGAACTTGTCGTCAGTGATGTA ACCGACGCCGTTAGGCCTCTTGAGTTGCTTCCTTATATGAACTCTTACGGCTGGAACAGTATCCGTTTGTTCACCGTAACTTCCAAATGCTGA
AA sequence Show only first row Show all	>Lus10015166 pacid=23149588 polypeptide=Lus10015166 locus=Lus10015166.g ID=Lus10015166.BGIv1.0 annot-version=v1.0 MELEPNCPPGQHLVAAFLAMEPSDCLISIARESGGLLSEQVQRFIWENCINQAAAIGNEPYMKKFVKKLIVEIESSHGNVLDELYEQYGCYMTSLKEESL RACKHISFLFPNDYAELSSCPESRKLVVPLNCSLNMLEGDTGCSVWPSSLYLSEFILSFPERFSGKSCFEVGSGVGLVGICLSQVKASKVVLTDGDLSTL ANMKLNLELNQCPQDRNLVKCIHLPWESASETQLQSFAPDIVLGADVIYDPSCIPDLVRVLSTLLKKGAMGYIASVIRNVNTFNCFLSVAEKAELVVSDV TDAVRPLELLPYMNSYGWNSIRLFTVTSKC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10015166 [exp]	0	1
AT3G22660			rRNA processing protein-relate...		Lus10037050 [exp]	2.0	0.9261
AT1G79915			Putative methyltransferase fam...		Lus10035886 [exp]	4.6	0.9165
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	4.6	0.9335
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Lus10030343 [exp]	5.7	0.9100
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10019889 [exp]	7.1	0.9195
AT2G39805			Integral membrane Yip1 family ...		Lus10004695 [exp]	7.5	0.9065
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10039297 [exp]	8.5	0.9097
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10033464 [exp]	8.5	0.9071
AT4G33740			unknown protein		Lus10020507 [exp]	9.5	0.9214
AT3G56210			ARM repeat superfamily protein...		Lus10010218 [exp]	10.8	0.8934

Compare expression of checked genes

Lus10015166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.