Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27450 407 / 3e-141 MVK, MK mevalonate kinase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031513 [exp] 629 / 0 AT5G27450 511 / 0.0 mevalonate kinase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035300 [exp] 518 / 0 AT5G27450 495 / 5e-176 mevalonate kinase (.1.2.3) Potri.013G024000 [exp] 508 / 0 AT5G27450 484 / 6e-172 mevalonate kinase (.1.2.3) Potri.015G125201 [exp] 64 / 4e-13 AT5G27450 56 / 5e-11 mevalonate kinase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015168 pacid=23149582 polypeptide=Lus10015168 locus=Lus10015168.g ID=Lus10015168.BGIv1.0 annot-version=v1.0 ATGGAGGTGAAAGCGAGAGCTCCGGGGAAGATCATACTTTCCGGCGAGCACGCGGTGGTTCATGGATCAGCTGCGGTGGCTGCTTCCATTGATCTCTACA CTCACATCACTCTAACTTTCCCTACTTCTCCTGAGCATGAAGACGTGCTGAAATTGCAGCTAAAGGACATGGCACTAGAGTTCTCATGGCCGATTTCGAG GATCAAATTAGCTTTATCCCATTTGGGAGTCCCATTCCCATCAAAACCGACCACATGCTCTTCAGAAACATTGAAGTTAGTCGCAGGATTGGTGGAAGAA CAAAGCATCCCTGAAGCGAAAATCGCTCTTGCCTCCGGAGTGACTGCATTTCTCTGGCTCTATACCTGCATCCAAGGATTTAGACCTGCAACTGTAGTTG TTAGTTCCGAACTTCCGCTAGGTTCAGGCCTTGGTTCATCTGCTTCCTTTTCCGTTGCACTCTCAGCTGCTCTCCTAGCGTTCTCGGACTCCATTAAGAT GGATTTGAGACGTCCAGGATGGTTAGAGTTCGAGGAGCCTCAGCTTGACCTGTTGAACAGATGGGCTTTCGAAGGTGAAAAAATCATTCATGGAAAGCCA TCTGGAATTGACAATACGGTTAGCACATACGGCAACATGATCAAGTTCAAATCTGGTAATCTAACCCGGATCAAGTCCAGCTTGCCGCTCAAAATGCTGA TTACCAACACTCGGATCGGAAGGAACACGAAAGCTTTAGTGGCTGGCGTTTCGGAGAGGAACTTGAGGCATCCCGAAGCCATGAGCTTTGTGTTCAATGC TGTTGACTCCATCAGTAAAGAGCTGGGCAACGTACTCCAGACCCCTGCTCCAGATGAGCTCTCGATAACCGAGAGGGAAGAGAAGCTCGAGGAGTTGATG GAGATGAACCAAGGCTTGCTCCAATGTATGGGAGTCAGCCATTCCTCTATCGAAACCGTTTTGCGAACGACATTGAAATACAAGCTCGCTTCGAAGTTGA CCGGTGCTGGTGGTGGTGGTTGCGTGCTTACACTCTTGCCTACCCTGCTATCAGGAACAATCATTGACAAGGTCGTTTTGGAGCTCGAAGCCTGCGGATT CCAATGTCTGACTGTGAAGATCGGTGGCCTCGGTGCTGAAATTTGCTTTAATGGTTCATCCTAA
AA sequence Show only first row Show all	>Lus10015168 pacid=23149582 polypeptide=Lus10015168 locus=Lus10015168.g ID=Lus10015168.BGIv1.0 annot-version=v1.0 MEVKARAPGKIILSGEHAVVHGSAAVAASIDLYTHITLTFPTSPEHEDVLKLQLKDMALEFSWPISRIKLALSHLGVPFPSKPTTCSSETLKLVAGLVEE QSIPEAKIALASGVTAFLWLYTCIQGFRPATVVVSSELPLGSGLGSSASFSVALSAALLAFSDSIKMDLRRPGWLEFEEPQLDLLNRWAFEGEKIIHGKP SGIDNTVSTYGNMIKFKSGNLTRIKSSLPLKMLITNTRIGRNTKALVAGVSERNLRHPEAMSFVFNAVDSISKELGNVLQTPAPDELSITEREEKLEELM EMNQGLLQCMGVSHSSIETVLRTTLKYKLASKLTGAGGGGCVLTLLPTLLSGTIIDKVVLELEACGFQCLTVKIGGLGAEICFNGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10015168 [exp]	0	1
AT5G20090			Uncharacterised protein family...		Lus10038250 [exp]	2.4	0.9501
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	3.3	0.9547
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	4.5	0.9483
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10013263 [exp]	4.5	0.9462
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10035966 [exp]	5.9	0.9435
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	6.0	0.9544
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10038637 [exp]	9.3	0.9081
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10021515 [exp]	9.8	0.9361
AT2G25950			Protein of unknown function (D...		Lus10007454 [exp]	10.0	0.9405
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	10.4	0.9418

Compare expression of checked genes

Lus10015168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.