Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10250 261 / 1e-77 DOT3 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) AT3G08660 221 / 3e-63 Phototropic-responsive NPH3 family protein (.1) AT5G03250 216 / 3e-61 Phototropic-responsive NPH3 family protein (.1) AT5G48800 213 / 3e-60 Phototropic-responsive NPH3 family protein (.1) AT3G08570 213 / 4e-60 Phototropic-responsive NPH3 family protein (.1) AT1G30440 212 / 3e-59 Phototropic-responsive NPH3 family protein (.1) AT5G13600 209 / 1e-58 Phototropic-responsive NPH3 family protein (.1) AT2G47860 207 / 8e-58 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT4G31820 203 / 1e-56 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT5G67440 201 / 7e-56 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015190 [exp] 291 / 3e-94 AT5G64330 78 / 1e-16 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10014337 [exp] 279 / 5e-84 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10026046 [exp] 275 / 3e-82 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 225 / 4e-64 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 218 / 1e-61 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 216 / 4e-61 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10031512 [exp] 210 / 7e-61 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10023523 [exp] 214 / 3e-60 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 211 / 2e-59 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G024400 [exp] 469 / 4e-158 AT5G10250 331 / 5e-106 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.005G075400 [exp] 290 / 2e-88 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.007G093000 [exp] 286 / 5e-87 AT5G10250 706 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 287 / 8e-87 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.007G112600 [exp] 283 / 3e-85 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.008G038600 [exp] 234 / 1e-67 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 234 / 2e-67 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 228 / 2e-65 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 224 / 4e-64 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 224 / 5e-64 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10015169 pacid=23149507 polypeptide=Lus10015169 locus=Lus10015169.g ID=Lus10015169.BGIv1.0 annot-version=v1.0 ATGCCCGAATACAGTTTTGGCAGGATTTGCGGTATGAATATGGGCGTTATAGGCAGGCGCTTGTGCGTCTGTGGTTTCTTCAAGGTCGAGAGGAAACTTG GCATCTGGGTTATGGAGGAATACGAGAATTCTGAATCGTGGAAGATGATTTGCTCTTTCAAGAATGTTATCGGGTGGTGGTGGGATCTTTCCTCTGTAAC CTCTGTGGGGAGCAATGGAGATAGAATTCTTTTGATGATTAATTGGTGTCGATTCGTTTGGTACGATCCAACGACGAAGAACGCGGACCAGACTGCTATC GTTAAGGTTTGTAAGGACTTGGGATGTAAGATAGTTAATTGGTGTCAATTCGTTTACGATCCAACGAAGAAGAATGTGGACGAGACTGCTATCATTAAGG TTTGTAAGGACTTGGGACGTGTATCATATGAAGCTATTTTCTGTTCGGGGAGTCTCGTTAAGGTATTTCCAAATGTCGTGAAGAAAGATGCTTACGACAA CGACCACTTTAAGAAATTGGTTCATGGAGGCTGTTCATCAATCTATGGCAAGAAGCACAACAAGTGTGTCATATTCCCATTGAAGGTGGATCTCATTGCT GAAGCACTTGAGAGAAGACACCATACTTGGATTGTTAGGACAGCTGAGGTAGCTGAGCCTGATTTGATCATTCAAGTTGGTGATTCTTACTTCCATGTTC ACAAGCTTGCTATGGTTTCCAGAAGCACATATCTGAACAGGCTGGTTTTCCAGAGCAGAACGAATAACTCCATCCAAAGGATCCATTTACAGGATTTTCC TGGTGGGGCCAAATCGTTCGAGCTGATAATGAAGTTCTGCTACGGATGGAAGATCAATTTAACACCAACCAACATTGCTGCTGTTTACTCTGCTGCAAAT TTCCTGGAGATGAACAATGCCATACTGGAAGATCAAGAACAGGGGATAAGCTTGATCTCCACGGCAGAAGCATTCCTCACTTACTTGCTGATGTTATCTT CGCGGAGAGACCTATTCCGCATCTTCGTAAGCTGTGAATTGATACCCTATTGGGCCGAAGAGCTTCGGATCTTGAATCGTTGCTTGAAAGCTCTTGCCTC CAGAGTATGCTTGGAGATCAAGGACTGCGAAAGGGGAGACTTGACTGCGAATCGATGGCTCGAAGAGGTTGCTTCTCTGCGAGTTGATCATTTCGTTCGA GTTGTTGAGTCGATGAAGAGGGAAGGAATGAAGCCAGAGATTGTAAGCTCATTTGTGGAACATTGGCTCTTGAAAGGGTCTCACCGGCTAGAAAATCTAA CAATTGAGACACTGAAAGTTGCCATAGAAGGATTGATAAGGCTGCTTCCTGAGCAAGAAACCTCTATACCTTGCAACATTCTGCTTCACCTTCTCAAGCT TGGAACTTCCATACGAGCCGACCCAGAGCTATTAGAGAGGACTGAGGTGAGAGCGTTTCGTAAGCTAGATGATTGTAGAATTTCGGACCTCCTGGTTCGA AATTCTACGGGAGTCGGTGCTCTGTATGATGTGGAGATTGTTGCCAGAGTTGTGAGAGCATATGCTGCTTGTGTTGCAAGTAACCCAACATCGGGGTTGC CTAATGTTGGAAGATTGGTTGATGAGTATTTGTGTTTAGTTTCAAGAGACACTAAGCTTTCTATGGAAGACTTCCTATCACTTGTCGATGCACTGCCGGA AGTCGCTAGGCGTTGCCACGACAACCTCTACCGCGCCATTGACTTGTACCTCAAGGTACATCCATGGCTGGCAGATGAAGAAAGAGCAGAACTTTGCAGA GCAATAGACTACAATAAGCTGTCTAAGGAAGCTCAGAGCCACGCGACCAAGAACGAAAGGTTATCGGTGCATATGTCGACAAGGATCATTCTGCTTGAAC AAGTGAACATGACCAGGTCAATATTGACTTGTTCTTCAGGAACAAGTAACCAAACCACTTTGAGAATCATGAGCAACAACGGCGGATCAAGGTTGGAGAA AGGATGCATATTATTTTCGCCGAGGAACGAGATCAGGATGATGAAGAAGGAAGTCGAGAGTATGAAGATGCAGATCAATGAGTTGCAGGTGTGTAAATTG AAGATGCAGCAGCAGTTGAAGAGATGCCTTGTATAG
AA sequence Show only first row Show all	>Lus10015169 pacid=23149507 polypeptide=Lus10015169 locus=Lus10015169.g ID=Lus10015169.BGIv1.0 annot-version=v1.0 MPEYSFGRICGMNMGVIGRRLCVCGFFKVERKLGIWVMEEYENSESWKMICSFKNVIGWWWDLSSVTSVGSNGDRILLMINWCRFVWYDPTTKNADQTAI VKVCKDLGCKIVNWCQFVYDPTKKNVDETAIIKVCKDLGRVSYEAIFCSGSLVKVFPNVVKKDAYDNDHFKKLVHGGCSSIYGKKHNKCVIFPLKVDLIA EALERRHHTWIVRTAEVAEPDLIIQVGDSYFHVHKLAMVSRSTYLNRLVFQSRTNNSIQRIHLQDFPGGAKSFELIMKFCYGWKINLTPTNIAAVYSAAN FLEMNNAILEDQEQGISLISTAEAFLTYLLMLSSRRDLFRIFVSCELIPYWAEELRILNRCLKALASRVCLEIKDCERGDLTANRWLEEVASLRVDHFVR VVESMKREGMKPEIVSSFVEHWLLKGSHRLENLTIETLKVAIEGLIRLLPEQETSIPCNILLHLLKLGTSIRADPELLERTEVRAFRKLDDCRISDLLVR NSTGVGALYDVEIVARVVRAYAACVASNPTSGLPNVGRLVDEYLCLVSRDTKLSMEDFLSLVDALPEVARRCHDNLYRAIDLYLKVHPWLADEERAELCR AIDYNKLSKEAQSHATKNERLSVHMSTRIILLEQVNMTRSILTCSSGTSNQTTLRIMSNNGGSRLEKGCILFSPRNEIRMMKKEVESMKMQINELQVCKL KMQQQLKRCLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015169 [exp]	0	1
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	1.7	0.9869
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	2.4	0.9869
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10012831 [exp]	3.9	0.9844
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002243 [exp]	4.2	0.9480
					Lus10006417 [exp]	5.2	0.9659
AT1G15260			unknown protein		Lus10035880 [exp]	5.5	0.9686
					Lus10008816 [exp]	5.7	0.9739
AT1G17200			Uncharacterised protein family...		Lus10042471 [exp]	5.9	0.9685
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	6.3	0.9700
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039891 [exp]	7.7	0.9650

Compare expression of checked genes

Lus10015169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.