Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05500 270 / 6e-92 Rubber elongation factor protein (REF) (.1) AT2G47780 187 / 1e-59 Rubber elongation factor protein (REF) (.1) AT1G67360 120 / 4e-33 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031493 [exp] 387 / 3e-136 AT3G05500 285 / 4e-96 Rubber elongation factor protein (REF) (.1) Lus10029892 [exp] 328 / 7e-115 AT3G05500 317 / 3e-110 Rubber elongation factor protein (REF) (.1) Lus10020648 [exp] 328 / 1e-114 AT3G05500 317 / 2e-110 Rubber elongation factor protein (REF) (.1) Lus10015786 [exp] 129 / 5e-34 AT1G67370 600 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10037019 [exp] 125 / 1e-32 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017300 [exp] 315 / 1e-109 AT3G05500 258 / 6e-87 Rubber elongation factor protein (REF) (.1) Potri.005G025700 [exp] 307 / 1e-106 AT3G05500 277 / 1e-94 Rubber elongation factor protein (REF) (.1) Potri.002G206000 [exp] 229 / 9e-76 AT3G05500 238 / 4e-79 Rubber elongation factor protein (REF) (.1) Potri.001G055300 [exp] 144 / 1e-42 AT1G67360 249 / 1e-83 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) Potri.003G173100 [exp] 121 / 8e-34 AT1G67360 239 / 7e-80 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05755 [flax] [poplar] REF Rubber elongation factor protein (REF)
Representative CDS sequence Show only first row Show all	>Lus10015171 pacid=23149566 polypeptide=Lus10015171 locus=Lus10015171.g ID=Lus10015171.BGIv1.0 annot-version=v1.0 ATGGCTGAAACAAACGCTAACCCGGCTACTCCTGCTCCACTGACAAGAGAGGAGGAAGAGAGGCTGAAGTACTTGCAGTTCGTGCAAGTTGCAGGGGTTC ACGCGCTGGTGACATTCACGAGCCTCTACATCTACGCCAAGGACAAGGCTGGTCCGCTGAAGCCTCGTGTGAAGACCATGGAAGGAACTGTGAAGAACGT TGTGGGTCCTGTTTATGACAAGTATCAGGATTTCCCGATCGGAGTCCTCAAGTTCGTCGATCGAAAGGTAGACGAATCAGTGACCACCCTGGACAGCCAC GTTCCCACAGTCGTCAAGCAGGTATCATCCCAAGCACTCACAGCAGCACAGGCTGCTCCGGGAGCAGCCCGTGCAGTAGCAACAGAAGTGCAGCGCTCTG GCGTAAAAGGGCTGGCGAAAACCGTGTACACAAAGTACGAGCCCAAGGCGAAGGAGCTTTACACTGCCTACGAGCCTAAAGCCGAGCAATGTGCTGCCTC GGCTTGGCGCAGGCTCAACCAGCTCCCACTCTTCCCTCAGGTGGCTCATGTGGTGGTCCCCACCGCAGCCTACTGGTCGGAGAAGTACAACGACACCGTT TCTAGCACTGCTGAGAAAGGGTACAAGTTTTCTTCCTACTTGCCTCTTGTGCCTACCAAGAGGATTGCTAAGGTGTTTGGTGGTGGTGGTGATCAGGTTT CAGTTTCGAACTGA
AA sequence Show only first row Show all	>Lus10015171 pacid=23149566 polypeptide=Lus10015171 locus=Lus10015171.g ID=Lus10015171.BGIv1.0 annot-version=v1.0 MAETNANPATPAPLTREEEERLKYLQFVQVAGVHALVTFTSLYIYAKDKAGPLKPRVKTMEGTVKNVVGPVYDKYQDFPIGVLKFVDRKVDESVTTLDSH VPTVVKQVSSQALTAAQAAPGAARAVATEVQRSGVKGLAKTVYTKYEPKAKELYTAYEPKAEQCAASAWRRLNQLPLFPQVAHVVVPTAAYWSEKYNDTV SSTAEKGYKFSSYLPLVPTKRIAKVFGGGGDQVSVSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05500			Rubber elongation factor prote...		Lus10015171 [exp]	0	1
AT3G62580			Late embryogenesis abundant pr...		Lus10025037 [exp]	1.0	0.8633
AT5G03370			acylphosphatase family (.1)		Lus10026533 [exp]	1.4	0.8581
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10028824 [exp]	3.9	0.8365
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10037596 [exp]	3.9	0.8486
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008499 [exp]	4.5	0.8130
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000097 [exp]	5.5	0.8201
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	7.2	0.8417
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10018942 [exp]	7.3	0.7954
AT1G80180			unknown protein		Lus10014488 [exp]	9.5	0.8192
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10015786 [exp]	11.2	0.8161

Compare expression of checked genes

Lus10015171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.