Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27690 115 / 7e-29 Heavy metal transport/detoxification superfamily protein (.1) AT3G06130 90 / 8e-20 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G56210 89 / 2e-19 Heavy metal transport/detoxification superfamily protein (.1) AT5G19090 89 / 2e-19 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT1G23000 86 / 1e-18 Heavy metal transport/detoxification superfamily protein (.1) AT3G05220 81 / 2e-16 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G37860 77 / 7e-16 Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 63 / 1e-11 Heavy metal transport/detoxification superfamily protein (.1) AT3G56240 61 / 3e-11 ATX1, CCH copper chaperone (.1) AT1G66240 60 / 3e-11 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031495 [exp] 150 / 1e-41 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10032445 [exp] 92 / 1e-20 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10041228 [exp] 90 / 2e-19 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10031514 [exp] 81 / 2e-16 AT5G19090 118 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10029942 [exp] 80 / 5e-16 AT5G19090 125 / 1e-31 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10004465 [exp] 77 / 3e-15 AT5G19090 122 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10028529 [exp] 70 / 4e-13 AT1G23000 81 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1) Lus10013911 [exp] 67 / 9e-13 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10001892 [exp] 64 / 9e-12 AT1G06330 101 / 1e-27 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026100 [exp] 119 / 8e-31 AT5G27690 100 / 3e-24 Heavy metal transport/detoxification superfamily protein (.1) Potri.013G017700 [exp] 118 / 9e-30 AT5G27690 115 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G206900 [exp] 111 / 6e-28 AT5G27690 111 / 3e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.014G132000 [exp] 110 / 1e-27 AT5G27690 114 / 4e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G024700 [exp] 107 / 9e-27 AT5G27690 114 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G128400 [exp] 92 / 1e-20 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114300 [exp] 91 / 5e-20 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G202800 [exp] 91 / 6e-20 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G091700 [exp] 81 / 4e-17 AT1G23000 99 / 1e-23 Heavy metal transport/detoxification superfamily protein (.1) Potri.014G140600 [exp] 76 / 1e-15 AT5G19090 81 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10015174 pacid=23149518 polypeptide=Lus10015174 locus=Lus10015174.g ID=Lus10015174.BGIv1.0 annot-version=v1.0 ATGGCGGCCAACGAACCCAAACCAGAGCTTCCCAAACCAGAGCAAAACCCACCTGAAGAGAAGGAAGCTCAGATTCCTCCTCCTGAACAACAACCAGTAC CAGAACCATCTCTCAAATACAAGACATGGGTCTTGAAGGTCTCAGTTCATTGCGAAGGCTGCAAGAGGAAAGTGAAAAAGATCCTCAACAACACCGATGG GGTGTACATGACGGAGATTGATTTGAGGCAGCAGAAGGTGACGGTGATAGGAAACGTCGACGGGGAAGCTTTAGTGAGGAAGCTGGTGAAGATGGGGAAG CACGCCGAGCTCTGGCCGGAGGAGAAGAAGAAGAAGAATAAGAAGAAAAATAAACCCAAGGAGAAGGAGGAGGAGGATGAAGAAGAAGATAGCGACGGGG ATGACGGCGGAGAGACGGACGCCGGTAAAGCAGAAGCTCAAGGAGGCGGAGAACCCGGTGGCGCCGCCGCCGGAAGACCCGCCGCCGGAAGCGGCGGAGG TGGAGGAGTAGGAAGAGTTGGGGTTCAGTTCAAGGAGGGGAAGGTTGAGATGGTGGGGTTTGCTCCCGGTGGAAACCCGCCTCCGGTGGTTGTCTCCGGT GAAGGAACCGACGGCGGAGGTGGCGGCGGCGGAGCGAAAAAGAAAAAGAAGAAGAAGCGTAAGAGTCACGGTAGTAATGTTAACGTTAACGGCGGTGGTG GTGGTGGCGGGGAGGAAGGGGAACAGAAGACTTGCGATGGACCTGCACCTACTCGAACGCCGCACCCTCCACCAGGTCAAAAGCAAGTCCAAGGGGCGTA CGGTCCACCCAATGGCATGCCGGCAAGTCAGCAGCATCCGTATCAATTCCCTCCACAGAATCAGTACCAGTACCACCACGCGCCGCCGGTTTATGCGGTG AGTTACAACACGGCGAATCCCAGCGGGAGCTACGGTGGAATGGCGTCGTCGTACTATTCTGCGCCGCAGTACTCCTACGCGTACGTACACCCAGGGGCTA GGGAGATCTCTCCGCCGTCGGGTGGTGGCGACTTGTACTCGGTTTATTCGTCTAGGCCGTCGGATTCGTTCGAAATCTTTAGTGATGAGAATCCCAATGC TTGCTCGCTTATGTGA
AA sequence Show only first row Show all	>Lus10015174 pacid=23149518 polypeptide=Lus10015174 locus=Lus10015174.g ID=Lus10015174.BGIv1.0 annot-version=v1.0 MAANEPKPELPKPEQNPPEEKEAQIPPPEQQPVPEPSLKYKTWVLKVSVHCEGCKRKVKKILNNTDGVYMTEIDLRQQKVTVIGNVDGEALVRKLVKMGK HAELWPEEKKKKNKKKNKPKEKEEEDEEEDSDGDDGGETDAGKAEAQGGGEPGGAAAGRPAAGSGGGGGVGRVGVQFKEGKVEMVGFAPGGNPPPVVVSG EGTDGGGGGGGAKKKKKKKRKSHGSNVNVNGGGGGGGEEGEQKTCDGPAPTRTPHPPPGQKQVQGAYGPPNGMPASQQHPYQFPPQNQYQYHHAPPVYAV SYNTANPSGSYGGMASSYYSAPQYSYAYVHPGAREISPPSGGGDLYSVYSSRPSDSFEIFSDENPNACSLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27690			Heavy metal transport/detoxifi...		Lus10015174 [exp]	0	1
AT5G27690			Heavy metal transport/detoxifi...		Lus10031495 [exp]	1.0	0.9584
AT3G02120			hydroxyproline-rich glycoprote...		Lus10015381 [exp]	4.5	0.8322
AT4G28100			unknown protein		Lus10018524 [exp]	6.0	0.8391
AT3G06270			Protein phosphatase 2C family ...		Lus10041242 [exp]	6.9	0.8316
AT4G10810			unknown protein		Lus10010114 [exp]	13.5	0.8354
AT2G30620			winged-helix DNA-binding trans...		Lus10005534 [exp]	13.8	0.8131
AT4G40045			unknown protein		Lus10034155 [exp]	16.7	0.7845
AT2G14660			unknown protein		Lus10033766 [exp]	17.0	0.8331
AT1G27435			unknown protein		Lus10012558 [exp]	21.6	0.7327
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	24.2	0.8039

Compare expression of checked genes

Lus10015174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.