Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05470 545 / 0 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 369 / 2e-114 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT5G54650 355 / 4e-109 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT3G25500 356 / 3e-108 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 324 / 1e-97 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 301 / 3e-90 AFH3 formin 3 (.1.2) AT1G70140 273 / 7e-80 ATFH8 formin 8 (.1) AT1G59910 251 / 5e-71 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 223 / 7e-62 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 200 / 3e-54 ATFH4, FH4 formin homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031496 [exp] 1066 / 0 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10004505 [exp] 584 / 0 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 570 / 0 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10019298 [exp] 366 / 9e-113 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 365 / 4e-112 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10002149 [exp] 365 / 4e-111 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10008739 [exp] 363 / 2e-110 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 356 / 3e-109 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011168 [exp] 331 / 6e-100 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017900 [exp] 614 / 0 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 595 / 0 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.007G054900 [exp] 375 / 1e-116 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 372 / 5e-115 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 369 / 9e-113 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 365 / 2e-112 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 363 / 1e-110 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.001G416100 [exp] 350 / 8e-107 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 342 / 1e-104 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.011G131700 [exp] 344 / 2e-104 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10015175 pacid=23149502 polypeptide=Lus10015175 locus=Lus10015175.g ID=Lus10015175.BGIv1.0 annot-version=v1.0 ATGGGGAAACTCTCCATGATCATTATCATCATCATCACCATTTTCATCCTCTCATCATCACAGAACTCCCACAAGTTCAGAGCTTTACTTGGTAGCAGCA GCAGAAGGAGAATGATACAGAATGGGATCAATCACAATCTCTCACCATCACCTTCTCCTTCTCCAAGTTTCGAAAACGACGAGGGTTTAGCTCCTTCTCT CAAGGCTCCAGCTGCAGCTCCAACTCTGCCGTTTCATCTGCATTCTCAATCTCATCATCATCCATTGCACCATCCAATGGCGATTCTTCAGCCACATATT CAAGAGGAAGACAGAAACTACAAGGGAAGAAGATTCAGAAGGGCTATAGTGGCTATTACTGCATCTACTGGAGCTGCATTGGTAGTTTCTGTGATCCTGC TTGTCTGGTTCTATGGCAAGTTCCGAAAGCACCAAAGTGGAACCCTGCCGGTGGTTCGCAGTAAGAAATGGAGAATCAGAGGTAAATCCAAGCATCTGAC TACCTCCCATAGTTCAGGAAGCAAGGTAAGCTTGAATGTGTATCAGAATCCGTTATTGTTAGGTAGAGACAGAGAGCAAGAAAGTTTACCAAAATGTGTG CTGGGAGGAGATACTGAAAATGGTGGTAGTGGGAATAGCTGTGCTGGTAGTTCTTCCACCAGGGAGATCGTTTCTGTACATGGAGACTCAGAAGAGGAAT CTGTAAGATATGATTCTGATGAAGATCAGAACCCTTCTTGTGGTGATAAAATCATTCGCATTGAGTGCCACTCATCTGATGATGATGATGAATCTTTCCA TTCTTTCCCGGATTCACATTCGTCGAACCTCAGGCTTTCCAATGCTTCCGCGGCCAGTCTTAGCAAGCCATCTGGTTCTTCTCCTCCTGTTGAGTCAATG CCAGCTCATAGTTTGAGCCATGGATTGGATTTGGATACAGACCTTCCACAGTCTGAGATAACTTCAACAGTTCCAAATTCCTCTTCAGAGAGGTTGAGTT CATTAGGATCAAACCACATTGAGAAAGGAAACACTTTACCTCAGAAACCTCTATCTGGAATCCCTCCCCCACCTGCTTGCCCCCCACCATTTCTGAAGGG AAATAGCAGCAGCAGCTATGGCTCGACGAAGAAAGGCCCTCCGCCACCTCCACAGTCATTGCTTCTTCAACCCACACCATTGGGGAAAGATGGAGTACCA TTGCCAAAGCTGAAGCCTCTTCATTGGGATAAAGTCAGAGCACCACCTGAGCAAAGAATGGTATGGGACAAAATTAGATCAAGCTCATTCGAGCTGGATG AAGAGATGATCGAGTCGCTTTTCGGGTACAACTTAAGAAGCACGACGAAGACTGACGAAATGAAGAGCAAAAGCCCTTCTCCAAGCAACCATGTCCTGGA CCACAAGAGACTCCAGAACATAACGATTCTTTCGAAAGCCTTGAACTCCACTCCTGATCAAGTCTGTAATTCACTAATGAAAGGGGAAGGCCTAGGGTTG CAGCAGCTGGAGGCACTAGCTAGAATGGTGCCAACTGATGAAGAACAGTCCAAGCTGAAAAACTATCAAGGGAACATCAACGGTCTCGGTTCGGCTGAGA GATTCGTAAGGACATTACTCACAGTACCACTAGCTTTCGAAAGAGTAGAAGCAATGCTTTTCAGAGAGACGTTTGATGATGAAGTTGTCCATCTTAGAAA CTCCTTCTCAATGCTTGAGGAAGCATGCAAAGAGCTAAGATCAAGCAGGCTATTCCAAAAGCTCCTAGAAGCAGTACTCAAAACAGGAAACCGTATGAAC ATCGGAACAATCCGAGGCGACGCTCGAGCTTTCAAGCTCGACGCCCTCCTCAAACTCTCCGACGTGAAAGGCACAGACAACAAAACCACACTCCTCCACT TCGTCGTTCAGGAAATTTGTCGAACGGAAGGCGTTCGCGTTTCGGAAAGCATAATGGGGCAAATCAGCCTGAAATCCCAAACCAAAACCGTAGAACAGCG TGAAGAGAATTACCGTCGGATGGGATTGGACCTCGTCTCCGGCCTCAGCACAGAGCTCTACAACGTCAAGAAGACCGCCACGATCGACCTCGACGTCCTC GCGACATCGGTCTCGAACCTGTCGAACGGGATTTCGAGCCTGAACCATCTGGTGGAGAAGCGACTACTTCCTCCAGATGGCGGGTTCGTCGATTCGATGC GGGAGTTTCTGAGAGACGCGAAGATTGAAGTGAAGGAAGTTAAGGAGGAAGAAGATCGAGTGATGGAGATGGTTAAGGGAGTTACCGAGTACTTCCATGG CAATGTAGGGAGAGATGAAGCGAACCCATTGAGGATCTTCGTTGTCGTGAGAGATTTCTTGGCGATGCTTGATCATGTCTGTAAAGAACTGAGGAGCTCC AAGGTGGCTAATTGCCAGAATCCCTTGGCGCCATTTCGGTAG
AA sequence Show only first row Show all	>Lus10015175 pacid=23149502 polypeptide=Lus10015175 locus=Lus10015175.g ID=Lus10015175.BGIv1.0 annot-version=v1.0 MGKLSMIIIIIITIFILSSSQNSHKFRALLGSSSRRRMIQNGINHNLSPSPSPSPSFENDEGLAPSLKAPAAAPTLPFHLHSQSHHHPLHHPMAILQPHI QEEDRNYKGRRFRRAIVAITASTGAALVVSVILLVWFYGKFRKHQSGTLPVVRSKKWRIRGKSKHLTTSHSSGSKVSLNVYQNPLLLGRDREQESLPKCV LGGDTENGGSGNSCAGSSSTREIVSVHGDSEEESVRYDSDEDQNPSCGDKIIRIECHSSDDDDESFHSFPDSHSSNLRLSNASAASLSKPSGSSPPVESM PAHSLSHGLDLDTDLPQSEITSTVPNSSSERLSSLGSNHIEKGNTLPQKPLSGIPPPPACPPPFLKGNSSSSYGSTKKGPPPPPQSLLLQPTPLGKDGVP LPKLKPLHWDKVRAPPEQRMVWDKIRSSSFELDEEMIESLFGYNLRSTTKTDEMKSKSPSPSNHVLDHKRLQNITILSKALNSTPDQVCNSLMKGEGLGL QQLEALARMVPTDEEQSKLKNYQGNINGLGSAERFVRTLLTVPLAFERVEAMLFRETFDDEVVHLRNSFSMLEEACKELRSSRLFQKLLEAVLKTGNRMN IGTIRGDARAFKLDALLKLSDVKGTDNKTTLLHFVVQEICRTEGVRVSESIMGQISLKSQTKTVEQREENYRRMGLDLVSGLSTELYNVKKTATIDLDVL ATSVSNLSNGISSLNHLVEKRLLPPDGGFVDSMREFLRDAKIEVKEVKEEEDRVMEMVKGVTEYFHGNVGRDEANPLRIFVVVRDFLAMLDHVCKELRSS KVANCQNPLAPFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05470			Actin-binding FH2 (formin homo...		Lus10015175 [exp]	0	1
AT3G05470			Actin-binding FH2 (formin homo...		Lus10031496 [exp]	1.0	0.9765
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003106 [exp]	3.7	0.9127
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10006381 [exp]	4.0	0.9038
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10019954 [exp]	6.7	0.8914
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	11.8	0.9031
AT4G00980			zinc knuckle (CCHC-type) famil...		Lus10003998 [exp]	12.0	0.9095
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025215 [exp]	17.3	0.8886
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10040767 [exp]	18.3	0.8448
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	19.0	0.9007
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003176 [exp]	21.0	0.8877

Compare expression of checked genes

Lus10015175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.