Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05420 969 / 0 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 868 / 0 ACBP5 acyl-CoA binding protein 5 (.1) AT5G04420 427 / 3e-143 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT5G18590 219 / 8e-62 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G74150 124 / 1e-29 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G18610 117 / 1e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 96 / 1e-20 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT5G48180 92 / 6e-20 NSP5 nitrile specifier protein 5 (.1) AT3G07720 82 / 7e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G04670 83 / 3e-16 Met-10+ like family protein / kelch repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031497 [exp] 1248 / 0 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10029902 [exp] 1095 / 0 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10004499 [exp] 1064 / 0 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10037933 [exp] 429 / 6e-143 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10038666 [exp] 426 / 2e-142 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 415 / 2e-138 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10017457 [exp] 414 / 9e-138 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10034163 [exp] 215 / 1e-60 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 193 / 2e-52 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026900 [exp] 994 / 0 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 980 / 0 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G031200 [exp] 422 / 4e-141 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G230300 [exp] 409 / 5e-136 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.008G214900 [exp] 241 / 7e-70 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G022000 [exp] 238 / 1e-68 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G013000 [exp] 139 / 2e-34 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 130 / 1e-31 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 110 / 4e-25 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 106 / 7e-24 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0632 [flax] [poplar] FERM_M PF00887 [flax] [poplar] ACBP Acyl CoA binding protein CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10015176 pacid=23149498 polypeptide=Lus10015176 locus=Lus10015176.g ID=Lus10015176.BGIv1.0 annot-version=v1.0 ATGTCGATGGCGAGGGCAAGCTCTGGCCTCGCATATCCGGATCGATTCTACGCCGCTGCAGCGTACGCTGGATTCGACGGATCTCCCAATTCTGCGAGCA CTGTCGCCTCCAAGTTCCAGACCGACACAGCTCTGCTTCTCTACGCCTTGTACCACCAGGCGACTGTTGGACCATGCAACTCTCCAAAACCCAGTGCGTG GAATGCTGTGGAGTTGAGCAAGTGGAAAAGTTGGCAAGGCCTTGGAAACATGGTTACAACTGAAGCTATGCGTCTCTTTGTGAAGATATTGGAGGAAGAA GAACCTGGTTGGTACTCTAGAGCATCTAACTATGTTTCTGAGCCTGTTACAAAATTGCCAGTGAATGACTCCAATGCCGAGCAGGCAACTGAAAATGGCA ATGATTTGCCAGAGACAAAGACTATAGCTAGTGAGAATGGGTCTCACATGGAAACACAGGACAAAGATGTTGTTTCTGAAGGTCTTGGTTTAGTTGTTGT CTATGACCAATGGATTGCACCTCCAATATCTGGCCAACGCCCTAAAGCTCGATACGAGCATGGAGCAGCAGTTGTCCAAGATAAGATGTATATTTATGGT GGGAACCACAATGGGCGCTATCTAAATGATCTTCATGTTTTGGATCTGAGAAGCTGGACTTGGTCAAAGGTAGATGGAAAAGTCGAAACTGAGTCTCAGG AGCCTCCTTCTCCAGCTACATTAGCTCCCTGTGCTGGTCATTCGTTGATATCATGGGAAAATAAGCTCATATCAATTGCTGGGCACACGAAGAATCCTTC CGAGTCCATGCAGGGTACTGGGTTTGATGTAAAAACTGGAACGTGGTCAATGTTAAAAACCTATGGGAAACCACCGGTCTCACGTGGAGGACAATCTGTT ACTCTAGTTGGAACAAGCTTAGTGATCTTTGGTGGAGAAGATGCCAAAAGATCTTTATTGAATGATCTTCATATCCTTGATCTCGAAACAATGACCTGGG ACGAGATTGACGCTGCCGGGGCGTCCCCTTCTCCTAGATCCGATCATGCTGCTGCTGTACATGCGGACCGTTACCTTCTTATCTTCGGCGGAGGCTCGCA CGCAGCTTGCTTTAACGATCTCCATGTGCTTGATCTGCAATCAATGGAGTGGACAAAACCAACACAACAGGGCGATATACCGAGTCCACGATCTGGACAT GCAAGTGTGACAGTTGGCGAGAATTGGTTTATCGTTGGCGGGGGTGACAACAAAAGCGGGGCATCTGAAACTGTTGTGTTGAACATGTCTACTCTTGTAT GGTCTGTTGTTACATCTGTTGAAGGCCGTGTGCCAGTTGCCAGCGAGGGATTGAGTTTGGTTGTGAGCTCATGCAACGGGGAAGATGTTCTGTTATCGTT CGGAGGATATAACGGTCGCTACACCAATGAGGTTAATGTCCTCAAGCCGAGCCACAAATCAACCTTGCAATCTAAGGCTACGGAGACTCAAGTTCCCGAC AGCGTATCGGCTGTTGTGCATGACTCGACGAAAGATTTCGAACCGGAGCTTGAAGTGAGCCAAAACAGCAAAATTAGAGAAATCATTGTTGATAATGGTG AACCTGCAGAAGCCATGAAATCTGTTGCTGAGGGAAGCAAAGAACAACTTCTAGCCACCCTAAAGGCAGAGAAAGGAGAATTGGAATCTTCTCTAACTAA GGAGCAGATCGAGTCTGGTCAACTGAAGCAAGAACTATCCGAAGCTGAAACTCGTAACTCCGAGCTTCACAAGGAGCTCCAATCCGTACGCAGCCAGCTT GCCACCGAACAGTCGAGGTGTTTTAAACTAGAGGTCGACGTGGCTGAGCTAAGACAAAAGCTGCAGACGTTAGAGGCTCTAGAGAAGGAGCTGGAGCTCC TGCAGCGCCAGAAGGCGGCCTCTGAACAAGCCGCCTTGAGCTCGAAGCAACGGCAAGGTGGCTCCAGTGGCGTATGGGGCTGGCTCGCAGGTTCCCCTGG CCACCGTGAAGAAGACGATTAA
AA sequence Show only first row Show all	>Lus10015176 pacid=23149498 polypeptide=Lus10015176 locus=Lus10015176.g ID=Lus10015176.BGIv1.0 annot-version=v1.0 MSMARASSGLAYPDRFYAAAAYAGFDGSPNSASTVASKFQTDTALLLYALYHQATVGPCNSPKPSAWNAVELSKWKSWQGLGNMVTTEAMRLFVKILEEE EPGWYSRASNYVSEPVTKLPVNDSNAEQATENGNDLPETKTIASENGSHMETQDKDVVSEGLGLVVVYDQWIAPPISGQRPKARYEHGAAVVQDKMYIYG GNHNGRYLNDLHVLDLRSWTWSKVDGKVETESQEPPSPATLAPCAGHSLISWENKLISIAGHTKNPSESMQGTGFDVKTGTWSMLKTYGKPPVSRGGQSV TLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAAGASPSPRSDHAAAVHADRYLLIFGGGSHAACFNDLHVLDLQSMEWTKPTQQGDIPSPRSGH ASVTVGENWFIVGGGDNKSGASETVVLNMSTLVWSVVTSVEGRVPVASEGLSLVVSSCNGEDVLLSFGGYNGRYTNEVNVLKPSHKSTLQSKATETQVPD SVSAVVHDSTKDFEPELEVSQNSKIREIIVDNGEPAEAMKSVAEGSKEQLLATLKAEKGELESSLTKEQIESGQLKQELSEAETRNSELHKELQSVRSQL ATEQSRCFKLEVDVAELRQKLQTLEALEKELELLQRQKAASEQAALSSKQRQGGSSGVWGWLAGSPGHREEDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10015176 [exp]	0	1
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10023103 [exp]	2.0	0.9198
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10031497 [exp]	2.0	0.9300
AT3G19870			unknown protein		Lus10012903 [exp]	3.0	0.9175
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024911 [exp]	4.2	0.9056
AT3G19870			unknown protein		Lus10030556 [exp]	4.5	0.9111
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002569 [exp]	4.5	0.9053
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10040268 [exp]	7.3	0.9076
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021681 [exp]	7.5	0.9063
AT3G12110		ACT11	actin-11 (.1)		Lus10040826 [exp]	9.4	0.9033
AT1G50120			unknown protein		Lus10040977 [exp]	9.5	0.9074

Compare expression of checked genes

Lus10015176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.