Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27650 530 / 8e-171 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 301 / 8e-87 Tudor/PWWP/MBT superfamily protein (.1) AT5G40340 99 / 8e-21 Tudor/PWWP/MBT superfamily protein (.1) AT3G09670 97 / 3e-20 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G02950 95 / 8e-20 Tudor/PWWP/MBT superfamily protein (.1) AT3G27860 89 / 1e-17 Tudor/PWWP/MBT superfamily protein (.1) AT1G48560 47 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031498 [exp] 1490 / 0 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10014546 [exp] 99 / 8e-21 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10032141 [exp] 98 / 2e-20 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10012010 [exp] 91 / 3e-18 AT3G09670 283 / 2e-85 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10016267 [exp] 86 / 7e-17 AT3G09670 276 / 9e-82 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10040367 [exp] 86 / 2e-16 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1) Lus10023486 [exp] 84 / 6e-16 AT5G02950 207 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1) Lus10030262 [exp] 52 / 2e-06 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10032634 [exp] 49 / 4e-06 AT5G27650 45 / 2e-05 Tudor/PWWP/MBT superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026800 [exp] 672 / 0 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G018700 [exp] 640 / 0 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Potri.008G209900 [exp] 115 / 3e-29 AT5G27650 149 / 1e-41 Tudor/PWWP/MBT superfamily protein (.1) Potri.004G130600 [exp] 109 / 5e-24 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.010G216900 [exp] 98 / 2e-20 AT3G09670 235 / 7e-65 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.008G044600 [exp] 95 / 2e-19 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.006G131800 [exp] 88 / 2e-17 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.016G085500 [exp] 86 / 7e-17 AT3G09670 260 / 4e-77 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.012G081500 [exp] 76 / 1e-13 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.003G188600 [exp] 61 / 5e-09 AT1G48560 69 / 9e-12 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Lus10015177 pacid=23149551 polypeptide=Lus10015177 locus=Lus10015177.g ID=Lus10015177.BGIv1.0 annot-version=v1.0 ATGAGCTCCGTCGCCGACGGAGACGGCGAATTGGATAGGAAACCGGTTAAGATTGAAGACAAGGTTGAAGCAGGAGCAGCGGAGGAGGGTAGGGTTACGG AATCGAACGAGGGAGACGATGGGAACATCAGTGGTAGGGTTTTAGGGAAGGAAGAGGAAGGATCTGACGGAGAGGAAAGGGAACGCAAGGTTTTGGATGG TGGGGAGAGTAAGGAAATGGAAGATGGAGGTGGAGCTAGGGTTTCGGAAGTGAAGAACGAGGAGAGTGATGAATTGAGCGGAGCTCCAGAGGATGACGAT GTGGACGAAGATGACGATGACCAGACGGAGAACTCGTCGGCGGGCGATAATAAGGACGATAATAAGGGTGAGGTTTACACTTCTTTGCTGTCGGAATTCG AAGCGTATGTTGCTAATGAGAAGAACGGGGCCATGCTTGGAACATCTAGGGCGTTGAGTTACGGGTTTGAAGTTGGTGATATGGTATGGGGGAAAGTGAA GTCTCATCCATGGTGGCCAGGCCACATCTTCAACGAGTCTCTTGCGTCGTCTTCTGTACGTCGTACTAGGAGGGAAGGTCATGTTCTTGTGGCCTTCTAT GGGGACAGTAGCTACGGGTGGTTTGATCCAGCTGAGCTTATCCCATTTGAGCTCCATTTCGGCGAGAAGTCTCAGCAGACGAGTTCGAGGACGTTTGCCA AGGCAGTGGAAGAGGCGGTGGACGAGGCGAGTAGAAGGTGCGGGCTTGGTCTGGTATGTAGGTGTAGGAGCAAGTGTAATTTCAGGCCTACAAACATCTC AGGGTATTTCGAAGTTGATGTTCCGGATTATGAGCCAAACGGGGTGTATTCTGTTGCTCAGATAAAAAAGGCGAGAGAAGAGTTTCAGCCAAGGGCTACA CTTGCGTTTGTGAAGAGATTGGCTTGTGATCCAGTTGCAGATGATCCAGATTCCATTGATTATGTTAGGCACAGGGCTACTGCTGCTGCTTTTCGGACAG CTGTGTTTGAGGAGTTTGATGAGACTTATGGGCAGGCATTTGGAGCTCCAAGTTCCCGGGGCTCTGATGAGGCAGCCAATGCTTCGGACCATCCTGTTAA AACTCGAACTCTAGCTCCGTTGAGTGGTCCACTAGTAATAGCTGAACCTCTGCGTGGTGGGAACAAGAGCTCCAAAAAGGCTATGAAAGTCAAGGACAAT TCCAAGAAAGACAAGTATCTGTTCAAGCGCCGAGATGAGCCAAGTGAATCGAAAGCTCCTCCAATCAGTCGAATGGAAGCAACGCCGTTATCCCCATCAG CATACGCAGAGGGTTCTTCTGGTGCAACATCAGGCGATTTCGTGTTGCAGAAAAGAGCTCCGGTACCATCTTCTACTGCAGAATGTGCAATGGAGGTGAT TACTAGCCTAGAAAATAAAGATGCTTCTGTCAAAGAAGCTGCCGCCATGTCTGATCATGGTGGTGGCGCTCTTGATGCAGGCCTGTCTGTTTTAGCATCC TCTCCTCAGCAAGTAACCGAGGTTACCGTCGATCTTAAGAACGAAGAGAGCGTTACAGCATCAGTAGGACCAGGCGATGCTTCTCTCCAGAGTTCTAACA GAGCAGATGGCGATGAGCCTCTTGATCCTCCTGGTTCGGAGGCTTTTCTACAAGAGGCGAAGCCTAAAGTGAAGAAGGCGAAAGTACCGAAACGCCCTCT TCCGGAAGGAAGCTCTGCAGAAACTGTCACGGTTGAGAATAAGAAAAGGAAGAAGAAGAAGAAAGAGCAACTGGGTACAGAGACTGGCACCGACGACACT CTTCAAAAGTCTCCAGCCGGAGGGCAAATGGCTGGAAAACGTAAAGGGAAGTTGAACTTATTCAAGACGTCTGGTTTAGCTAATGGCGGTGAAATAAAGC TTCCATATTTGTTAAGGGATTTGCACTCCCTTGCTCTGAATCCCTTCCATGGTGCTGCTCAAATGAGTGCTAGACCGATACCCGCAGTACAGTTCTTTCT CCGGTTCCGGTCCATGGTATACCAGAAGAGCTTGGCTAATATTCCTCCATCGAATTTGGAGGCTGATCCCAGTGAAGCTCGTGGCTCTTCTAAATCTGCT GCTGCATCTAGCATGGTAACATCAGATGAGGATGCCAAGGTTGTTCATGTTCAGCCTACTCCTAGACCGGCGAAACCCTCTCTCAGACCGGACGACCCAT CGAAAGCTGGCCGAAAACGCCAACCGAGCGATCGCCAGGAGGAAATGGCTGCAAAGAAGGTGCAGAAGGTCAGTCAAATGAAGTCATTGACAGCAGAGAA GAAGGCTGGTATGAGATCCTCGTCGGAACCGGTTAATCCACCACCCAAACCAAATAGGAAATCGGACCCGCCTCTGCCTCCACCTAGAACCAGATTAGTC GAGCCAACAATGCTGGTGATGAAGTTCCCTCCCCAGACAAGTCTCCCATCCCTCGCGGAGCTGAAGGCTAGGTTCGCAAGGTTCGGAGCCTTGGACCAGT CGGCAACCCGAGTCTTTTGGAAATCCTGCACGTGTCGGGTCGTGTACCGGTACAGGCTCGATGCAGAGGCTGCGATGAGGTACGCGACGAGAAAGAACAA TAATCTGTTCGGCAATCTCGATGTCAAGTACACTCTCCGAGACGTCATGGCTACCGCAGACGATGCTCCTCCTCCGACAGACCCTCCAGCGAGGGTACCG CCACCTCCCTACCAGCAGCCAGTTAAGTCCATACTCAAGAAATCCAACGGCGACGAGACTATACGCGACGCGCACGACGCGGAAAATGGGAATGTCGGTA GAGGAGCGAACCGGGTCAAATTCGTGCTGGGCGGAGAGGAGGAGAATCCCGCTAAGCCACCATTGATGAGCATCAACAATGCTAGTAGTAGTACAGCTAC TTCTTCTACTACAACTGTTGCAATGGATTTTTATAGTAAGAGCTTTCAAAAGTCTAATGCCCCTCCTCTGCTCCCTCTCCCGCCTACATTTACGAAACTG CCACTGCCTCCATTGATGAATAATCCTCCTCCTACTATGATCCCTAGCAGTAGTAGTAATTCGCAACCTTCGCAACATAATGTGGCTCCTCCTCCGCTGC AGCCTGCGGCCGCCGATGTCTCGGGGCAGATGCTGAGCCTGCTGACCAAGTGTAGCGATGTTGTTGCCGGAGTTTCTGGGCGGCTGGGGTATATCCCTTA CCATCCAATTTGA
AA sequence Show only first row Show all	>Lus10015177 pacid=23149551 polypeptide=Lus10015177 locus=Lus10015177.g ID=Lus10015177.BGIv1.0 annot-version=v1.0 MSSVADGDGELDRKPVKIEDKVEAGAAEEGRVTESNEGDDGNISGRVLGKEEEGSDGEERERKVLDGGESKEMEDGGGARVSEVKNEESDELSGAPEDDD VDEDDDDQTENSSAGDNKDDNKGEVYTSLLSEFEAYVANEKNGAMLGTSRALSYGFEVGDMVWGKVKSHPWWPGHIFNESLASSSVRRTRREGHVLVAFY GDSSYGWFDPAELIPFELHFGEKSQQTSSRTFAKAVEEAVDEASRRCGLGLVCRCRSKCNFRPTNISGYFEVDVPDYEPNGVYSVAQIKKAREEFQPRAT LAFVKRLACDPVADDPDSIDYVRHRATAAAFRTAVFEEFDETYGQAFGAPSSRGSDEAANASDHPVKTRTLAPLSGPLVIAEPLRGGNKSSKKAMKVKDN SKKDKYLFKRRDEPSESKAPPISRMEATPLSPSAYAEGSSGATSGDFVLQKRAPVPSSTAECAMEVITSLENKDASVKEAAAMSDHGGGALDAGLSVLAS SPQQVTEVTVDLKNEESVTASVGPGDASLQSSNRADGDEPLDPPGSEAFLQEAKPKVKKAKVPKRPLPEGSSAETVTVENKKRKKKKKEQLGTETGTDDT LQKSPAGGQMAGKRKGKLNLFKTSGLANGGEIKLPYLLRDLHSLALNPFHGAAQMSARPIPAVQFFLRFRSMVYQKSLANIPPSNLEADPSEARGSSKSA AASSMVTSDEDAKVVHVQPTPRPAKPSLRPDDPSKAGRKRQPSDRQEEMAAKKVQKVSQMKSLTAEKKAGMRSSSEPVNPPPKPNRKSDPPLPPPRTRLV EPTMLVMKFPPQTSLPSLAELKARFARFGALDQSATRVFWKSCTCRVVYRYRLDAEAAMRYATRKNNNLFGNLDVKYTLRDVMATADDAPPPTDPPARVP PPPYQQPVKSILKKSNGDETIRDAHDAENGNVGRGANRVKFVLGGEEENPAKPPLMSINNASSSTATSSTTTVAMDFYSKSFQKSNAPPLLPLPPTFTKL PLPPLMNNPPPTMIPSSSSNSQPSQHNVAPPPLQPAAADVSGQMLSLLTKCSDVVAGVSGRLGYIPYHPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10015177 [exp]	0	1
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10031498 [exp]	1.0	0.8903
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10013167 [exp]	5.1	0.8506
AT5G37930			Protein with RING/U-box and TR...		Lus10028535 [exp]	7.7	0.7811
AT5G55040			DNA-binding bromodomain-contai...		Lus10043121 [exp]	10.0	0.7373
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031325 [exp]	13.4	0.7615
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10024798 [exp]	13.4	0.7024
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10037576 [exp]	15.5	0.7680
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	18.7	0.7962
AT2G33730			P-loop containing nucleoside t...		Lus10031509 [exp]	18.9	0.7908
AT1G17070			GC-rich sequence DNA-binding f...		Lus10002252 [exp]	21.2	0.7241

Compare expression of checked genes

Lus10015177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.