Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62770 472 / 2e-165 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) AT3G56440 396 / 4e-136 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT2G40810 385 / 1e-131 ATATG18C homolog of yeast autophagy 18C (.1.2) AT5G05150 291 / 4e-95 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT4G30510 95 / 5e-22 ATATG18B ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) AT5G54730 42 / 0.0006 ATATG18F ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) AT1G03380 42 / 0.0007 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1) AT1G54710 42 / 0.0009 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031500 [exp] 793 / 0 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10004501 [exp] 564 / 0 AT3G62770 493 / 5e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10029900 [exp] 555 / 0 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036577 [exp] 481 / 8e-169 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10041353 [exp] 475 / 3e-166 AT3G62770 608 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10003694 [exp] 368 / 6e-125 AT2G40810 580 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10001580 [exp] 368 / 2e-124 AT2G40810 577 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10036618 [exp] 52 / 7e-07 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10035835 [exp] 52 / 7e-07 AT5G54730 521 / 1e-174 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018400 [exp] 521 / 0 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.005G026600 [exp] 514 / 0 AT3G62770 491 / 7e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.002G207865 [exp] 493 / 1e-173 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.014G132300 [exp] 490 / 4e-172 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.019G062800 [exp] 401 / 2e-137 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.018G101200 [exp] 115 / 2e-28 AT4G30510 432 / 2e-152 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) Potri.011G132700 [exp] 52 / 7e-07 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.001G417000 [exp] 50 / 3e-06 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10015178 pacid=23149572 polypeptide=Lus10015178 locus=Lus10015178.g ID=Lus10015178.BGIv1.0 annot-version=v1.0 ATGTCGAATCCTTCCTCTCTCACCTCCTCCTCCTCATCCATCTTCCAATCCATCCCGCCGGATTCCGATTCCGTCTCCAACGATTCCTTTTCAACCGCCG TCGAAGACGCCACCGTCCAGCTCCCTTCCGTACACCACCTCTCCTTCAACCAGGACTATGGATGCTTCGTCGCGGGACTCGGAAACGGGTTCCGTATCTT CAACGCCGACCCGTACAAGCCTCTATTCCGCCGCGACATGGATTCTCAATCTGGCGGAGGCGGAGATGGCGGAGGAGGAATCGGACTCGTCTCCATGCTC TTCCGCTGCAATGTGCTCTGCTTTGTCGGAGGAGGCTCCAACCCCGTGTACCCGACGAACAAGGTGATGATATGGGACGACCATCTCTCGCGTTGCTTCG GAGAGCTGTCGTTCCGATCAGAGGTGAAGAACGTCAAATTGCGGAGGGATAAGATCATCGTCGTGCTGGCTCAAAAGATCTTCGTCTACAATTTCGTTGA TTTGAGGCTCGTGCATCAGATTGAGACGGCCTTGAACAGCAAGGGGCTGTGTGAGGTTTCGCATACTTCGTCGCCGATGATCCTAGCTTGCCCTGGCTTG CAGAAGGGACAGATTCGGGTAGAGAATTACAGTTCTAAGAAGACCAAGTTTGTAATGGCTCATGATTCCAGGTTAGCTTGGATGTCGATGACTCAAGATG GCAGATTGTTGGCTACTGCTAGCAGTAAAGGTACCCTGGTGAGAGTTTTCAATGCCTTGGATGGCTCATTGCTTCAGGAGGTTAGACGGGGTGCAGACAG AGCAGAAATCTACAGCCTTGCATTCTCCTCCGATGCTCACTGGCTCGCAGTCTCGAGTGACAAGGGAACCATCCATGTCTTCAGCCTCAAGGCTGATTCA GGCTCGTTGGCAACACTGACGAATGAGAGACCACAGGCCGCAGCTCCCCCGAATCTTTCCAATGGTTCGAGCATCTCATCTCTTTCCATCTTGAAAGGTG TATTGCCAAAGTATTTCAGCTCGGAGTGGTCTGTGGCTAAGTTCCGGTTACCTGAAGGTTCTCAGTGCCTAGTTGGGTTCGGGCAACAACAGAATACCAT TGTTGTCATTGGACTGAACGGAAGCTTCTACAAATGCGAGTTTGATCCTGTAAAAGGAGGAGAAATGACGCAGCTGGAACACCATAATTTTCTAACTGCA GACACTTTCCTTAAGCCTGGAGAAACATTCACCAAACCTGTAGTTCTTCGTTTCGATCTTCGAATCGGTGGAAAGGTTATGAGTTATAGTTACAGAGGTT GCTGGTTGCCTGGTTCGACTAACTTAGCTTACAATGGTTGTTGA
AA sequence Show only first row Show all	>Lus10015178 pacid=23149572 polypeptide=Lus10015178 locus=Lus10015178.g ID=Lus10015178.BGIv1.0 annot-version=v1.0 MSNPSSLTSSSSSIFQSIPPDSDSVSNDSFSTAVEDATVQLPSVHHLSFNQDYGCFVAGLGNGFRIFNADPYKPLFRRDMDSQSGGGGDGGGGIGLVSML FRCNVLCFVGGGSNPVYPTNKVMIWDDHLSRCFGELSFRSEVKNVKLRRDKIIVVLAQKIFVYNFVDLRLVHQIETALNSKGLCEVSHTSSPMILACPGL QKGQIRVENYSSKKTKFVMAHDSRLAWMSMTQDGRLLATASSKGTLVRVFNALDGSLLQEVRRGADRAEIYSLAFSSDAHWLAVSSDKGTIHVFSLKADS GSLATLTNERPQAAAPPNLSNGSSISSLSILKGVLPKYFSSEWSVAKFRLPEGSQCLVGFGQQQNTIVVIGLNGSFYKCEFDPVKGGEMTQLEHHNFLTA DTFLKPGETFTKPVVLRFDLRIGGKVMSYSYRGCWLPGSTNLAYNGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10015178 [exp]	0	1
AT5G64230			unknown protein		Lus10033177 [exp]	1.7	0.8695
AT5G64230			unknown protein		Lus10010617 [exp]	2.4	0.8646
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014741 [exp]	3.0	0.8364
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	3.9	0.8582
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029674 [exp]	6.5	0.8255
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	7.9	0.8460
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015745 [exp]	9.2	0.8200
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10013488 [exp]	14.8	0.8326
AT1G34300			lectin protein kinase family p...		Lus10006052 [exp]	14.8	0.8344
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Lus10024046 [exp]	15.4	0.7347

Compare expression of checked genes

Lus10015178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.