Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09020 710 / 0 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT1G27070 54 / 2e-07 5'-AMP-activated protein kinase-related (.1) AT3G01510 51 / 2e-06 LSF1 like SEX4 1 (.1) AT4G16360 45 / 5e-05 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031501 [exp] 895 / 0 AT1G09020 701 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10004490 [exp] 834 / 0 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 828 / 0 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10006516 [exp] 642 / 0 AT1G09020 648 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037503 [exp] 421 / 6e-147 AT1G09020 433 / 9e-152 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037504 [exp] 197 / 3e-60 AT1G09020 195 / 5e-60 homolog of yeast sucrose nonfermenting 4 (.1) Lus10039076 [exp] 53 / 2e-07 AT4G16360 392 / 2e-138 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10038783 [exp] 53 / 2e-07 AT4G16360 395 / 1e-139 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10037220 [exp] 49 / 1e-05 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020400 [exp] 722 / 0 AT1G09020 715 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G028800 [exp] 716 / 0 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.010G023500 [exp] 632 / 0 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.008G216800 [exp] 627 / 0 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029300 [exp] 337 / 7e-115 AT1G09020 287 / 3e-95 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029900 [exp] 267 / 5e-88 AT1G09020 249 / 1e-81 homolog of yeast sucrose nonfermenting 4 (.1) Potri.006G005800 [exp] 52 / 5e-07 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.010G034600 [exp] 51 / 1e-06 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.016G006400 [exp] 50 / 1e-06 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.008G194300 [exp] 50 / 3e-06 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10015179 pacid=23149575 polypeptide=Lus10015179 locus=Lus10015179.g ID=Lus10015179.BGIv1.0 annot-version=v1.0 ATGTTTGCTTCCAGTTCAGATGTTGGCCATGAAGTGGTCCCTATGCGCTTTGTTTGGCCTTATGGAGGAAGAGTGGTGCTTCTCAGTGGCACTTTCACTA GGTGGACTGATCACATAGCCATGTCCCCAATGGAGGGTTGTCCCACGGTGTTTCAAGTCATTTGCAATTTGACGCCTGGATATCACCAGTATAAATTTAT TGTTGATGGAGAGTGGCGGCATGATGAACACCAGCCATCCGAAAGTGGAAATTTTGGAGTGGTGAATACAGTCTTTTTACCCACGGAACTGGATGTTGGT CCTTCTAGTCTTAGCCCTGGGGTGCATGGGAGATCGAACATGGACTTGGATGATGTCTTTGTTCATTCAGATACTGTCAGCGGGATATCAGATGCTGATT TGGAGGTCTCTCGGCATCGAATTTCTGCATTCTTATCGACACATACTGCATATGAGTTGCTCCCTGAGTCAGGCAAGGTTGTTGCTTTGGATGTTAAACT ACCTGTAAAGCAAGCATTCCATATTCTCCATGACCAGGGTGTACCTGTGGCTCCTCTTTGGGATTTTTCGAAAGGTCAGTTCGTCGGTGTTCTAAGTGCA ATGGATTTCATCCTGATCCTAAAAGAGCTTGGAAATCGTGGATCAACTCTAACAGAAGAGGAGTTGGAAACCCATACTATATCAGCTTGGAAGGAAGGGA AGTTGCATCTTAGCAGACAAATTGATGGCAATGGGAATCCGTATCCTAGACACCTGATCCATGCTGGGCCTTACGATTCTTTGAAAGATGTTTCTCTAAA AATCTTGCGGGGGAACATCTCCACGATCCCCATTATCCATTCTTCGTCTCAAGAGGGTTCATTTCCGCAGCTGTTACATCTAGCTTCCCTTTCTGGGATA CTAAAATGTATATGTAGACACTTCAGGTATTCCGCTGGTTCCTTGCCCGTTTTGCAGCAGCCAATTTGTTCAATTCCTTTAGGTTCATGGGTTCCCAAAA TCGGGGAATCGAATCCAAGGCCTGTTGCAGTCTTGAGACCCAATGCTTCTCTTGGTGCTGCCCTGTCATTGTTAATTCAGGCTGACGTAAGTTCAATCCC GATTGTAGATGACAACGATTCACTTCTCGATATATATTCGCGGAGCGATATCACCGCATTGGCGAAAGATAAAGCCTATACACAGATTCATCTAGACGAA ATCAGCATCCATCAGGCATTGCAATTAGGGCAAGATGCAAACTCGACCCACGGAATGTACAATGGACAGAGATGTCAGATGTGTTTGAGATCTGATCCTC TTCACAAAGTGATGGAGCGATTATCAACTCCTGGGATTCGGAGACTGTTGATCGTGGAAGCCGGAAGCAAACGTGTGGAAGGGGTCGTCTCGGTGAGCGA CGTGTTCAGATTCTTGCTTGGTTAG
AA sequence Show only first row Show all	>Lus10015179 pacid=23149575 polypeptide=Lus10015179 locus=Lus10015179.g ID=Lus10015179.BGIv1.0 annot-version=v1.0 MFASSSDVGHEVVPMRFVWPYGGRVVLLSGTFTRWTDHIAMSPMEGCPTVFQVICNLTPGYHQYKFIVDGEWRHDEHQPSESGNFGVVNTVFLPTELDVG PSSLSPGVHGRSNMDLDDVFVHSDTVSGISDADLEVSRHRISAFLSTHTAYELLPESGKVVALDVKLPVKQAFHILHDQGVPVAPLWDFSKGQFVGVLSA MDFILILKELGNRGSTLTEEELETHTISAWKEGKLHLSRQIDGNGNPYPRHLIHAGPYDSLKDVSLKILRGNISTIPIIHSSSQEGSFPQLLHLASLSGI LKCICRHFRYSAGSLPVLQQPICSIPLGSWVPKIGESNPRPVAVLRPNASLGAALSLLIQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYTQIHLDE ISIHQALQLGQDANSTHGMYNGQRCQMCLRSDPLHKVMERLSTPGIRRLLIVEAGSKRVEGVVSVSDVFRFLLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	0	1
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	2.2	0.9293
AT1G23230			unknown protein		Lus10016701 [exp]	4.0	0.9037
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10012891 [exp]	4.2	0.8931
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	5.3	0.9179
AT1G20670			DNA-binding bromodomain-contai...		Lus10001391 [exp]	5.9	0.8992
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	6.6	0.8710
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	7.7	0.9019
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Lus10020897 [exp]	7.7	0.9030
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	8.7	0.9044
AT5G55060			unknown protein		Lus10021546 [exp]	9.4	0.8989

Compare expression of checked genes

Lus10015179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.