Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55040 477 / 4e-156 zinc finger (Ran-binding) family protein (.1) AT1G70650 190 / 1e-52 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G48570 152 / 2e-39 zinc finger (Ran-binding) family protein (.1) AT5G17790 145 / 1e-35 VAR3 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) AT1G53460 58 / 8e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031502 [exp] 660 / 0 AT1G55040 421 / 5e-137 zinc finger (Ran-binding) family protein (.1) Lus10031503 [exp] 228 / 7e-70 AT1G55040 105 / 2e-26 zinc finger (Ran-binding) family protein (.1) Lus10032790 [exp] 213 / 3e-60 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10009049 [exp] 189 / 2e-52 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10003580 [exp] 166 / 7e-45 AT1G70650 323 / 8e-108 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10009681 [exp] 149 / 1e-38 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10013630 [exp] 143 / 9e-35 AT5G17790 338 / 4e-103 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10003872 [exp] 135 / 2e-32 AT5G17790 453 / 1e-148 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10043289 [exp] 49 / 3e-06 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022300 [exp] 520 / 2e-171 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.005G033000 [exp] 487 / 3e-160 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.010G107400 [exp] 225 / 2e-64 AT1G70650 449 / 4e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.015G038200 [exp] 177 / 5e-48 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 171 / 7e-45 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.013G067200 [exp] 155 / 6e-39 AT5G17790 466 / 6e-152 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Potri.001G376900 [exp] 64 / 2e-10 AT1G53460 254 / 3e-83 unknown protein Potri.001G056000 [exp] 52 / 7e-07 AT1G67325 340 / 5e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.003G172500 [exp] 44 / 0.0003 AT1G67325 374 / 3e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10015180 pacid=23149607 polypeptide=Lus10015180 locus=Lus10015180.g ID=Lus10015180.BGIv1.0 annot-version=v1.0 ATGGCGAGAACCCAACTCCGTCTCCTCCTATGTCGACGCTTAAACCCCTACACCTTCTCCCTTTACCAAAAGCCTGAACCCCGCTGTCTCCATTCTCTTA AACCCTACTCCTCCACTTCCGCCGCCTCAAAATCTCCCGACCCGCCGCAGCCGCCGAAACCCAATTCACTCTCCGCCCGTATGAGCTTCGTATTCGATCA AATCGACGCGATAGAGCGGGACCGCTCCGAGAAGAACGAAACGCTCCAGAAGATCCGCGCTTGGCGCCAATCCAAACAGAATCAGAATCAACATCAGCCG GAAACGACGTCGTCGGGGAGTTTCTCTGATGCTAAAGCAGCTGTGATTAGCTCCCAGTGTGAAGAAGAAGAAGATGAGCAGCAGCAGCAGCAGTCTGATA CGACGCCGTCGAAGAGTGTTCCTGAGCCTGTAGAAGAGTATGGGATGAAGAGTAGTAGTAGTAGTAAGAGGGAAGTTGAGCTGGTGCATCCATGGCCAGA ATGGATAGAGCTGATGGAGAGGCTGGTTCAGCAGAATTACTTTGATCATATGAGGAGTAGAGAAGAGGATGAGATGGTTGAAAGTTTGGAAATTGGCGGG CTTGAAGCCTTGAATGATGGTGTAAGTGTTAATGGCGAAGGTTTAGAGGTTGATTTTGATAAAGATTTCAAGACTGTGCAGAATGCCTTTGTCAATTTTG GCAAGGACAGATTTGACATACTGAGAGGCTTGGGGAGAAAGGACATCCAGATCTTGGTTGGGTATGGCTGCCCGACTGCAGATAGGCGGGTCTCTATGTC CGCGAAGCTCTTGAGAAAGCGTGTGCACCTCGACGAAGGCGATGTTTGTAGCAGCTGCAGCTTGAGGAGCTCGTGCGAGAAAGCGTTTCTGACAACGAAC AAAGAAGATGAGGCTCGAACTATCGATGTGATGAGGGTTCTCTTAGCTTATGGCTTCGATCCCGCCACGAACGAATTGGTGACTAACAAGCCTCTCCTGA AGGAGAAGTCGCTCAAAACTGTCGTTCGGAAGTTGCTTCACGAGATTGTGAAGCTGAGTGCAGTTCCCATCGATCCGAACCTCCCTCCTCCTGTGATCAA GAAGCCTCCTCCCAAGGTGAAGCAGCCTCCCCCTCCTCCGAGGAAACGAGTTGGGCGTGATGACATCGAGATGAAAAAAGGCGACTGGCTTTGCCCCAAG TGCGATTTCATGAATTTTGCGAAGAACACAGTGTGTTTACAGTGTGATGCCAAGCGGCCGAAAAGACAGTTGCTTCCTGGAGAATGGGAATGCCATCAGT GTAACTTCTTGAACTACAGGAGGAACATGGTTTGCTTCCATTGCGACTGCAAACGTCCTCACGACGAGTTCTTGGAGGACAAAATGGAGGAGAGAAGCCG TGATCATAAGATGAGGTTCGAGAAAGGTTCAGCCCGTCGTCCTGAAGTGTCAAACGCCTGGAACTTTGACTTCGATGACGATGAATCAGATGGCGCGGAT GTAGCTGCATTCGAGAATGCAGACTCTGCTGCAAAAGAGTATGATGAGTCTCCTCCCATGGCTGCTGGTCCAGCTCAGGGTGGACGAAACTTCAGAGACC GTGGAGCTGATGTCAACTGGGGAAGCAGTAGAAATCCAAACAAGTATTCAGATTCGCAACAGGCTAGTCGATCTGGAACCGGGTTTGATGATTTCGATGA TGAAGATGATATCGACAGTTATGAGTTGGATTCTCAACCCAGGACGAACAGTTCTTCGAGGCAAGTGTATGAGTCGGAAGACATTGACTTTCCTGATGAT GATGACTTGCCTACTCATCCGAGTTCAAGTCCCCGTTCAGGTTCTAGACCATCGCGACGAAAGAAGCCGTTCTCTGATGACGACGAGCTTGGTCTGGATT CAGATGAAGAGCTTTCATCACATTCGAAATGGAAATCCAGCCACATTGCGTCTGAACATAAAGGTCGAGGTAAGGGTTCTTCGAAAAGACTGAGCTTTGG GTCAGATGATTCTGATGATCTTGAGCTTGATTCTGATGATGATTCGGATGGTCGAAAAATGAAACCCAAAGGAAGGAGCTCGAGTGGGTTTTCGAGGCGA GGAAATGATGAATATATGGAAGACAGCGACGATGATGACTATGGTAGATCATCGAAGCGTAAATTTGGCGGGAGAAGGGACTTTGATCGATCGCCAAAGC GTGGTAAGGACGGTGGTGGGAGGAGGGATTCGGGGAACGATGACTTCGACCGTTCCTCTTCCCGTGGTAGAAGCAGCAAAGGAAGTGGCGGAGGATGGAA AACGACAGGTGGAGGACGAAGAAGAGGCGACGATTTCGACAGGCCTAGAGGTGGTGGAGGAAGAAGAGGCGACGATTTCGACAGGCCTAGAGGCGATGGA AGAAGAGGCCGAATGCACTGTAGGCGATCGAAATGTAGACAGTGGTAG
AA sequence Show only first row Show all	>Lus10015180 pacid=23149607 polypeptide=Lus10015180 locus=Lus10015180.g ID=Lus10015180.BGIv1.0 annot-version=v1.0 MARTQLRLLLCRRLNPYTFSLYQKPEPRCLHSLKPYSSTSAASKSPDPPQPPKPNSLSARMSFVFDQIDAIERDRSEKNETLQKIRAWRQSKQNQNQHQP ETTSSGSFSDAKAAVISSQCEEEEDEQQQQQSDTTPSKSVPEPVEEYGMKSSSSSKREVELVHPWPEWIELMERLVQQNYFDHMRSREEDEMVESLEIGG LEALNDGVSVNGEGLEVDFDKDFKTVQNAFVNFGKDRFDILRGLGRKDIQILVGYGCPTADRRVSMSAKLLRKRVHLDEGDVCSSCSLRSSCEKAFLTTN KEDEARTIDVMRVLLAYGFDPATNELVTNKPLLKEKSLKTVVRKLLHEIVKLSAVPIDPNLPPPVIKKPPPKVKQPPPPPRKRVGRDDIEMKKGDWLCPK CDFMNFAKNTVCLQCDAKRPKRQLLPGEWECHQCNFLNYRRNMVCFHCDCKRPHDEFLEDKMEERSRDHKMRFEKGSARRPEVSNAWNFDFDDDESDGAD VAAFENADSAAKEYDESPPMAAGPAQGGRNFRDRGADVNWGSSRNPNKYSDSQQASRSGTGFDDFDDEDDIDSYELDSQPRTNSSSRQVYESEDIDFPDD DDLPTHPSSSPRSGSRPSRRKKPFSDDDELGLDSDEELSSHSKWKSSHIASEHKGRGKGSSKRLSFGSDDSDDLELDSDDDSDGRKMKPKGRSSSGFSRR GNDEYMEDSDDDDYGRSSKRKFGGRRDFDRSPKRGKDGGGRRDSGNDDFDRSSSRGRSSKGSGGGWKTTGGGRRRGDDFDRPRGGGGRRGDDFDRPRGDG RRGRMHCRRSKCRQW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55040			zinc finger (Ran-binding) fami...		Lus10015180 [exp]	0	1
AT4G01860			Transducin family protein / WD...		Lus10009986 [exp]	7.7	0.8551
AT1G75200			flavodoxin family protein / ra...		Lus10012082 [exp]	10.1	0.8449
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	21.3	0.8253
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10036232 [exp]	21.8	0.8259
AT4G23540			ARM repeat superfamily protein...		Lus10031065 [exp]	23.8	0.8107
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10005385 [exp]	25.6	0.8307
AT3G04820			Pseudouridine synthase family ...		Lus10009188 [exp]	33.3	0.8141
AT2G31740			S-adenosyl-L-methionine-depend...		Lus10016656 [exp]	33.3	0.8100
AT2G07750			DEA(D/H)-box RNA helicase fami...		Lus10034110 [exp]	37.9	0.8049
AT1G30960			GTP-binding family protein (.1...		Lus10023046 [exp]	39.9	0.7725

Compare expression of checked genes

Lus10015180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.