Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16830 298 / 8e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 130 / 1e-31 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16890 117 / 2e-27 PPR40 pentatricopeptide (PPR) domain protein 40 (.1) AT5G65560 115 / 2e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 114 / 4e-26 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12700 113 / 6e-26 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT2G39230 111 / 3e-25 LOJ LATERAL ORGAN JUNCTION (.1) AT1G62670 109 / 8e-25 RPF2 rna processing factor 2 (.1) AT1G62590 108 / 1e-24 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G09900 108 / 1e-24 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006373 [exp] 136 / 2e-33 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 136 / 2e-33 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 120 / 5e-28 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 115 / 2e-26 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 114 / 5e-26 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027974 [exp] 113 / 6e-26 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 111 / 4e-25 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043104 [exp] 110 / 5e-25 AT3G16890 720 / 0.0 pentatricopeptide (PPR) domain protein 40 (.1) Lus10039056 [exp] 108 / 3e-24 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G013300 [exp] 132 / 6e-32 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046200 [exp] 123 / 3e-29 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 117 / 2e-27 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 117 / 2e-27 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 116 / 5e-27 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034400 [exp] 115 / 1e-26 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050240 [exp] 115 / 1e-26 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 114 / 2e-26 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 112 / 7e-26 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G250700 [exp] 112 / 1e-25 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03704 [flax] [poplar] BTAD Bacterial transcriptional activator domain CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015181 pacid=23149610 polypeptide=Lus10015181 locus=Lus10015181.g ID=Lus10015181.BGIv1.0 annot-version=v1.0 ATGTTGGACAAGTGGGTTCTTCCTCTACTACGTCTTACGCGTACCAGAGCTCGGTTTCTCCTGCCGGGCTTTAAGTCTTCTTCATCGATTCGAAGCGTTT CATCTTTGCCAAGTTTAAGCTTTCCTGCAATTGATAAACCTCATGAGTTTACTTCCCCCAGGAGTAATGGTGGGGTTACCTTGACGAATCAGATTGTTCG TTCTACGCTATTGAATTGCTCATCCGACTTGATATCTCTCAGCCTCTTCATCTGGTCATCTAGGCAGCCTAATTACTTTCACAGCAGGGAAGATTTCGAT TCCATGGTTGGTGTTGTTCTGAGGTTGACTTGGAGGTACGGAACTGTAAACGCCATTGTCAAGGAGCTCGAAGCCATTGGTCTTGCTGCAAAGGCAGGTA CTTTCTTGCTTTTGCTTAGAGTTTACTGGTGTGGAGGAACGCACTTCATGGTTTTGGAAACTCTCGACAAGATGTGTTGCTTCGGTTTCACTCCCAACAC GTTTGCTTACAATGTGATCATCGACATCTTCTTCAGATTGGGAAACAAAGACGGCGGAATGAAGGCTTTATCAGAGGTTCCTTCCCCGAATTTCTTGAGT TACAATATCGCCTTGCGCCACGTTTGCAAGGCCAATGATTCGGTCCTTATTCGTGATGTTCTTGGTAGTATGATGAGGAATGGTTACTATCCCACCAGTG AAGCTCTTGAGATGGTTCTGAATTGTTTCTGCAGAGTAGGGAACTTAGATGCAGCCTTTCAAGTGTTGGGTTTGATGACTACGTCCGGCATTCCGTTGTC GGTTACGATCTGGGCGATGTTTATTGATGGATTCCGACGCATTGATAAGCCTGACATGGCTTTTTTCCCGTTTAACAAGATAATTGAGAGTACCAGTATG GGATCCGGAATGTTCCATAAGGCATATGGTAGTATCTTGAAGGAATCCATAGGTAATCCGCACAATCTGGTGTTTTGCAACGCTCTTATACATAGCTTGA TTAAGATTGGACCCGATGAAGCTGCTGAGGTTTTGTTCGATAGCATGTTGAGATCGAGAATGACGTTTGATTCTTTCAATATCTGCTCTTTGTTATCGGC TCGAGGCAGTTCCAAGGCATCAGTTTTATGGCTAAAACGGGTTAGTAGAGTCGTCACTGTGCAACCTGATCTTGTTCTGTATAACTCACTGATGCATTAT TCCTGTGTTGCCGGATGTCCGTTTCTTGCTGAGTGGTTTTTTAATGATATGATAGAGAAAGGGTTTACACCGGATAACTACAGCTTCGCTGGGTATCTTA CAGCACTGTTTGCGCAAGGGAGGAGCGATGAAGCGGTCTGTGTGTATCGTGGACTTCTCATGAGTGGCTATAATCTCGATGCTCATGTGCATACGGTTGT CATTCAGTGTCTGTTTCAAAGCGGTAAGCTTTACGAGGCGGTGGATTGCTTTCAGAAAGCTGTGGTGAAGAACTATCCGTTAGATGATGTATCCTACACG GTTTTGATTCGTGGACTGTTGGAAAGTGGAAGGCAAGAAGCAGCGTTGGATTTGTATGATCGAATGAAGGATGATGCTAATAATGTCTCGCCTAGTGTGC ATACTTATAGAGCGATGCTTCTATGGGTGTGCAAAGGAAGAGACCCGAAAAGGGTTCGGAAGTTGATGGAAGATATAGTGGAAGCTGCGGTTCAGTTGGA TTATACGTCGTTTATGAAGTTAACTTTATTCTTTGTGGAAGATGTCGGGTCGAATAAATATAAGAATGGTATGAAGTGGATGTGCAGTATGGTCATCCTA CCGGATGCGGCGACTTATTCTCAGTTTCCTGATGTAGAATCTTTAGATGCTGTGTAA
AA sequence Show only first row Show all	>Lus10015181 pacid=23149610 polypeptide=Lus10015181 locus=Lus10015181.g ID=Lus10015181.BGIv1.0 annot-version=v1.0 MLDKWVLPLLRLTRTRARFLLPGFKSSSSIRSVSSLPSLSFPAIDKPHEFTSPRSNGGVTLTNQIVRSTLLNCSSDLISLSLFIWSSRQPNYFHSREDFD SMVGVVLRLTWRYGTVNAIVKELEAIGLAAKAGTFLLLLRVYWCGGTHFMVLETLDKMCCFGFTPNTFAYNVIIDIFFRLGNKDGGMKALSEVPSPNFLS YNIALRHVCKANDSVLIRDVLGSMMRNGYYPTSEALEMVLNCFCRVGNLDAAFQVLGLMTTSGIPLSVTIWAMFIDGFRRIDKPDMAFFPFNKIIESTSM GSGMFHKAYGSILKESIGNPHNLVFCNALIHSLIKIGPDEAAEVLFDSMLRSRMTFDSFNICSLLSARGSSKASVLWLKRVSRVVTVQPDLVLYNSLMHY SCVAGCPFLAEWFFNDMIEKGFTPDNYSFAGYLTALFAQGRSDEAVCVYRGLLMSGYNLDAHVHTVVIQCLFQSGKLYEAVDCFQKAVVKNYPLDDVSYT VLIRGLLESGRQEAALDLYDRMKDDANNVSPSVHTYRAMLLWVCKGRDPKRVRKLMEDIVEAAVQLDYTSFMKLTLFFVEDVGSNKYKNGMKWMCSMVIL PDAATYSQFPDVESLDAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16830			Pentatricopeptide repeat (PPR)...		Lus10015181 [exp]	0	1
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	6.9	0.8655
AT3G11250			Ribosomal protein L10 family p...		Lus10009887 [exp]	10.5	0.8585
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014014 [exp]	10.8	0.8582
					Lus10002220 [exp]	12.8	0.7591
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10013696 [exp]	16.1	0.8219
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10014970 [exp]	18.9	0.8359
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	20.1	0.8480
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	20.1	0.7972
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	20.1	0.8436
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10021645 [exp]	22.1	0.8185

Compare expression of checked genes

Lus10015181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.