Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05340 162 / 3e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 129 / 2e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 128 / 9e-35 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 127 / 2e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 126 / 2e-34 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G13270 122 / 1e-32 RARE1 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08510 114 / 4e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 113 / 9e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 113 / 1e-29 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G59200 112 / 2e-29 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031504 [exp] 256 / 1e-82 AT3G05340 754 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 120 / 5e-32 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 119 / 8e-32 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018223 [exp] 118 / 2e-31 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 118 / 3e-31 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 117 / 3e-31 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 117 / 3e-31 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 117 / 3e-31 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 115 / 2e-30 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021100 [exp] 180 / 5e-54 AT3G05340 860 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G066100 [exp] 130 / 1e-35 AT5G13270 977 / 0.0 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 126 / 4e-34 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 124 / 1e-33 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G104700 [exp] 119 / 1e-31 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 119 / 1e-31 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G100600 [exp] 117 / 6e-31 AT1G16480 397 / 1e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.012G018800 [exp] 115 / 1e-30 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G175900 [exp] 115 / 1e-30 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 114 / 7e-30 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015182 pacid=23149491 polypeptide=Lus10015182 locus=Lus10015182.g ID=Lus10015182.BGIv1.0 annot-version=v1.0 ATGCATAGTATAGCCCGAGTCGGTCTGCTCAAAGAGGCATTAGCATTCATCGAGGGGCTACCAGTGGAGCCTGATGTGCTGATATGGCAGGCTTTGCTAG GCGGATGCGTGATCCGTGTTAACGTAGAGATAGGAGAGCTGGCTGCTGAGGAGTTGTTCAAATGTTCACCTAATGAGCCGGCACCTTACGTTTTGCTGGC GAATATTTACTCTTCTAACGATAAGTGGAAGGAGAGGGCTGTGGCTATCAGGAGGATGAAGGAAATTAGGGTTTCGAAAGAGACCGGGATTAGTTGGATC GAGATTGAGAAGAGGGTTCATAGCTTTGTCGTTGAGGATAGAATGCATCCTCAAAGTGAGGAGATTTATAGGAGTTTGATGGAGTTGCTTGGGAATATGT TGATGAAGGTTATGTTCCTGACAAGAGGTTTGTTCTTCATTATGATGTTCCTAATGGAAAAGGTGATGTGA
AA sequence Show only first row Show all	>Lus10015182 pacid=23149491 polypeptide=Lus10015182 locus=Lus10015182.g ID=Lus10015182.BGIv1.0 annot-version=v1.0 MHSIARVGLLKEALAFIEGLPVEPDVLIWQALLGGCVIRVNVEIGELAAEELFKCSPNEPAPYVLLANIYSSNDKWKERAVAIRRMKEIRVSKETGISWI EIEKRVHSFVVEDRMHPQSEEIYRSLMELLGNMLMKVMFLTRGLFFIMMFLMEKVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05340			Tetratricopeptide repeat (TPR)...		Lus10015182 [exp]	0	1
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	14.7	0.6406
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	15.9	0.6781
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10003857 [exp]	27.3	0.6320
AT5G01880			RING/U-box superfamily protein...		Lus10025145 [exp]	28.7	0.5764
AT1G22610			C2 calcium/lipid-binding plant...		Lus10010269 [exp]	30.4	0.5978
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10007476 [exp]	35.0	0.6216
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004518 [exp]	37.6	0.5982
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011604 [exp]	48.2	0.5968
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10002958 [exp]	52.5	0.5202
AT3G15395			unknown protein		Lus10027849 [exp]	52.9	0.6062

Compare expression of checked genes

Lus10015182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.