Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55020 1204 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 1095 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G72520 696 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 682 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT3G45140 638 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G67560 594 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031505 [exp] 1680 / 0 AT1G55020 1237 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10001465 [exp] 1343 / 0 AT1G55020 1162 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10008202 [exp] 1269 / 0 AT1G55020 1100 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10004915 [exp] 1111 / 0 AT3G22400 1289 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10025857 [exp] 761 / 0 AT3G22400 809 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10013151 [exp] 717 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10008113 [exp] 710 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10015666 [exp] 709 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10031810 [exp] 659 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022000 [exp] 1254 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032700 [exp] 1253 / 0 AT1G55020 1307 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032400 [exp] 1242 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032600 [exp] 1221 / 0 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032800 [exp] 1183 / 0 AT1G55020 1240 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022100 [exp] 1180 / 0 AT1G55020 1241 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.008G151500 [exp] 1170 / 0 AT3G22400 1274 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G089500 [exp] 1142 / 0 AT3G22400 1267 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G177200 [exp] 761 / 0 AT3G22400 786 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G018200 [exp] 751 / 0 AT3G22400 791 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10015184 pacid=23149561 polypeptide=Lus10015184 locus=Lus10015184.g ID=Lus10015184.BGIv1.0 annot-version=v1.0 ATGCAGAAACTCATTGACTGCTTGAGTGGCCATGGCAATGCCGCTGAGAAGAAGAGGAAGCAGAAGAAGATCAAGGGAACTGTGGTGCTGATGAAGAAGA ACGTCCTCGACTTCAACGACTTCAATGCTTCGATCCTCGATCGTATCCACGAGCTCCTCGGCCAGCGTGTCTCCCTTCAGCTCATCAGCTCCGTCCATGC CGACCCCAAGAATGGAAACAAAGGGAGGGTAGGGAAGGCAGCATACCTGGAGAACTGGATTCCGACGATAGCTCCATTGACGGCCGGTGAAACATCCTAC ACTGTAACCTTTAACTGTGACGAACAAGATGACATTCCAGGAGGGTTCCTGATCAAGAACAACCACCACAGTGAGTTCTATCTCAAATCCTTAACCCTCG AGGACATCCCCGGCCATGGCAGGATCCATTTCGTCTGCAACTCGTGGGTTTACCCTGCTAAACGATATCAGAAAGACCGTGTCTTCTTCACCAACAAGAC GTATCTACCACACGAGACGCCGTTGCCACTTGTTAAGTACAGAGAGGAAGAGCTGGTTACCTTGAGAGGCAACGGAGAAGGTGAGCTTCAGGAATGGGAC AGGGTGTATGACTATGCTTTATACAATGATCTCGGAAATCCTGACAGCGATCCGAAGTCTGCTCGACCGACTCTCGGAGGTTCGGTTGAGTACCCTTATC CTCGCAGGGGGAGGACTGGCAGGCCGCCATCAAAATCAGATCCTACGGTAGAGAGCAGGGTGCCACTACTGATGAGCTTAGACATATATGTACCAAGGGA TGAGAGATTTGGTCACCTGAAGATGTCTGATTTCCTTCTCAACGGACTTAAAGCAATCGTCCAGTTCGTCAAGCCAGAGCTGGAGGTTCTGTGTGCTGAG AACAAGAACGAATTTGATTCATTCGACGAGGCTTTGAAGATCTACGATGGAGGGGTGAAGCTCCCTGGTGGCCCTGCACTTGATAGTCTCTGGAAGAACG TTCCACTTGATATCATCAAGCAGATCTTTCACACTGATGGGGAGAGGATTCTGAAATACCCGTTGCCTGAAGTAATCAAAGAGAGCAAGACCGCATGGAG AACTGATGAAGAATTTGCCCGGGAAATGCTAGCTGGCCTTAACCCTGTTGTCATACGTCTACTTCAGGAATTCCCTCCTAAGAGCAAGCTGGACCCTAAC GTCTATGGCGATCAGGATAGTTCAGTAACTGAAGAACACATAAAGACTGGCCTAAATGGATTAACCATAGCTGAGGCAATCAAGAACAACAAGCTATTCA TACTGGATCACCATGACACATTGATGCCATACCTGAGGAGGATCAACGAAACCCCTTCGACCAAAACGTACGCAACGAGAACGATCCTATTCTTGCAAGA TGACAACACTCTGAAGCCCCTTGCGATCGAGCTGAGCTTGCCGCATCCTGATGGAGACAAGGTTGGATCCATCAACAACGTCTACACTCCACCACCAGAT GATCATCATCAAGAAGGCAGCCTTGAAGATTCCATTTGGCAACTGGCTAAAGCTTATGTAGCAGTCAATGACTCCGGATACCATGAACTCGTCACCCACT GGTTGAACACTCATGCTGTGATCGAGCCGTTCATACTTGCAACGAACAGGCAGCTAAGCGTGCTTCATCCAATCCACAAGCTTCTCCACCCTCATTTCCG CGACACGATGAACATAAACGCGCTTGCGAGACAGATCCTCATCAATGGCGGAGGGCTGGTGGAGGCAACTCTTTACCCTTCGAAGTACTCCATGGAGATG TCTTCTTTCATTTACAAGGACTGGAACTTCACTGACCAAGCTGTCCCTCAGGATCTCAAGAAGAGGGGAATGGCAGTTTCAGACCCAAACTCCAAGCACG GCCTCCGCTTACTCATCAAAGACTACCCTTATGCCGTCGATGGCCTCGAGATCTGGTCAGCGATCAGAAACTGGGTCTCAGATTACACATCTCTGTACTA TAAATCCGACGCCGACATCCAGCACGATTCCGAACTTCAATCATGGTGGAAGGAGCTTGTGGAAATCGGCCATGGCGACAAGAAACACGAAACCTGGTGG CCGAAGATGCAGACACGTTCCGAGCTCATCGAATCAATCACAACAGTGATCTGGATCGCGTCTGCTCTCCACGCGTCGACCAATTTCGGACAGTACACAT ACGCCGGGTACCTCCCGAACCGGCCGACGATCAGCCGCCGGTTCATTCCTGAAGAAGGCAGCCCTGAGTTCGAGGAGCTGAAGACGGATCCTGACAGGGC ATTCCTGAGGACGGTGACGGCGAGACTTCAGACTCTGTTAGGGATCTCGCTGATCGAGCTCCTGTCGACGCATTCTTCTGACGAGGTTTACCTTGGGCAG AGGGAGACGAAGGAGTGGACGGCGGACTCAGGGGCGGTGGCGGCGTTCGAGAGGTTTGGAGATGAGCTGGCCGAGGTGGAGAGGAGGATCGTGAAGAGGA ACGGCGAGGTGAAGCTGAAGAATCGGAATGGCCCGGTGAAGGTACCGTATACTCTGCTTTTCCCGACGAGCGAAGTTGGCCGGACCGGCAAGGGAATTCC GAACAGTATTACTATTTGA
AA sequence Show only first row Show all	>Lus10015184 pacid=23149561 polypeptide=Lus10015184 locus=Lus10015184.g ID=Lus10015184.BGIv1.0 annot-version=v1.0 MQKLIDCLSGHGNAAEKKRKQKKIKGTVVLMKKNVLDFNDFNASILDRIHELLGQRVSLQLISSVHADPKNGNKGRVGKAAYLENWIPTIAPLTAGETSY TVTFNCDEQDDIPGGFLIKNNHHSEFYLKSLTLEDIPGHGRIHFVCNSWVYPAKRYQKDRVFFTNKTYLPHETPLPLVKYREEELVTLRGNGEGELQEWD RVYDYALYNDLGNPDSDPKSARPTLGGSVEYPYPRRGRTGRPPSKSDPTVESRVPLLMSLDIYVPRDERFGHLKMSDFLLNGLKAIVQFVKPELEVLCAE NKNEFDSFDEALKIYDGGVKLPGGPALDSLWKNVPLDIIKQIFHTDGERILKYPLPEVIKESKTAWRTDEEFAREMLAGLNPVVIRLLQEFPPKSKLDPN VYGDQDSSVTEEHIKTGLNGLTIAEAIKNNKLFILDHHDTLMPYLRRINETPSTKTYATRTILFLQDDNTLKPLAIELSLPHPDGDKVGSINNVYTPPPD DHHQEGSLEDSIWQLAKAYVAVNDSGYHELVTHWLNTHAVIEPFILATNRQLSVLHPIHKLLHPHFRDTMNINALARQILINGGGLVEATLYPSKYSMEM SSFIYKDWNFTDQAVPQDLKKRGMAVSDPNSKHGLRLLIKDYPYAVDGLEIWSAIRNWVSDYTSLYYKSDADIQHDSELQSWWKELVEIGHGDKKHETWW PKMQTRSELIESITTVIWIASALHASTNFGQYTYAGYLPNRPTISRRFIPEEGSPEFEELKTDPDRAFLRTVTARLQTLLGISLIELLSTHSSDEVYLGQ RETKEWTADSGAVAAFERFGDELAEVERRIVKRNGEVKLKNRNGPVKVPYTLLFPTSEVGRTGKGIPNSITI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10015184 [exp]	0	1
AT2G30530			unknown protein		Lus10019115 [exp]	4.0	0.8804
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10027611 [exp]	4.2	0.8844
AT4G35680			Arabidopsis protein of unknown...		Lus10028380 [exp]	18.8	0.8418
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	18.8	0.8860
AT3G06180			Ribosomal protein L34e superfa...		Lus10004432 [exp]	25.1	0.8573
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10022892 [exp]	30.3	0.8391
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10015975 [exp]	34.3	0.8655
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10004992 [exp]	60.2	0.8388
AT1G28510			Optic atrophy 3 protein (OPA3)...		Lus10005273 [exp]	61.0	0.8331
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10021111 [exp]	61.6	0.8290

Compare expression of checked genes

Lus10015184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.