Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09000 577 / 0 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 526 / 0 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT3G06030 514 / 1e-175 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G53570 268 / 6e-81 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 268 / 9e-79 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT3G13530 226 / 5e-63 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 225 / 2e-62 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT4G08500 218 / 2e-62 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT5G66850 215 / 1e-60 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT4G08470 199 / 7e-56 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031506 [exp] 1068 / 0 AT1G09000 659 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10034060 [exp] 512 / 7e-175 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 509 / 1e-173 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10002096 [exp] 268 / 3e-77 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10014976 [exp] 259 / 8e-76 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 258 / 3e-75 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 257 / 7e-75 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 256 / 3e-74 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10000829 [exp] 248 / 7e-74 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022700 [exp] 702 / 0 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.005G033400 [exp] 674 / 0 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.008G149500 [exp] 576 / 0 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.010G092000 [exp] 548 / 0 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.007G106800 [exp] 270 / 2e-81 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G062500 [exp] 266 / 4e-80 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.001G102900 [exp] 266 / 3e-78 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 264 / 4e-77 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 261 / 3e-76 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 253 / 2e-73 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10015185 pacid=23149562 polypeptide=Lus10015185 locus=Lus10015185.g ID=Lus10015185.BGIv1.0 annot-version=v1.0 ATGCAGGACTTCATCGGATCAGTGAGGCGATCGTTCGTCTTCCGTCCAGACTCCGAAGGAAGCAGCAGCAGCACCCACTCAGTACTCAGTCCTCCTCCTC ATCCATTGGTGGACAAGATCAATTCCTGCATTCGCAAGTCCAGAATCTTCACCAAGCCCTCGCCTTCCTCCCTCCCCGCGCCTCCTCCGATCCGGTACCG GAAAGGAGAGTTGATCGGATGCGGTGCTTTCGGCCATGTATATATGGGCATGAACCTCGACTCTGGAGAGCTCCTCGCTATCAAGCAGGTTCTGATTCCG GCTAATGGTGTTACGAAGGAGAAAGCACAGGCTCATGTGAAGGAGCTTGAGGAAGAAGTGAAGCTCTTGAAGAATCTTTCACATTCCAATATTGTGAGAT ACTTAGGCACGGTAAGGGAGGAGGGGTCTCTGCATATTCTGCTCGAGTTTGTTCCTGGAGGATCGATATCATCCCTTCTAGGAAAATTCGGACCTTTTCC TCAAGCAGTTATTAGAACATATACTGAGCAATTATTGCTGGGGCTGGAGTATTTGCATAACAATGGAATAATGCACCGGGACATTAAGGGTGCAAATATC CTTGTAGACAATAAAGGATGCATCAAACTTGCTGATTTTGGTGCATCCAAGCAGGTTGTTGAGCTGGCTACAATATCTGGGGCTAAGTCGATGAAGGGTA CACCCTACTGGATGGCTCCCGAAGTTATTCGTCAGACAGGGCATAGTTTCTCTGCTGACATTTGGAGCGTGGGCTGTACTGTGATAGAGATGGCGACTGG GAAGCCTCCTTGGAGCCAAAAATACGAAGAGGTTGCTGCCCTCTTCCACATAGGTTCAACAAAGTCACACCCAGAAATCCCTGAGCATCTCTCAGACGAA GCCAAAGACTTTTTGCTCAAGTGTTTGCAGAAAGAACCAAATATGAGACTAAATGCATCTGAGCTGCTAAAGCATCCATTTGTTACGGGCGAGCACGGGG TTTCTGATACAACTAGTTTGACCCCACAGTCAAAATCTACTCACGTAGACATTAGAGAAGTGCCATCAGTATCTGGCTCAGACGATCTCTGTAATTTAGG GAGCATGAACTACTCCATTAATCTACAAAACTCAAGTGAAACTCAACATCTCTGGAGAGAAAACGATGGAGATAATGATATGTGTCAGGTCGATAGTGAT CTTTGTGCGTCAAATAAAATTCCTATCCTGACTTCTGGTCAATTTTACAATAATCAGAATGTCGAGCAAGGATTTGTTGGCGATCTGATGGGAAAGTTCA ACGAGTGTGTCGAACCAGACCAAGGAGTGAGAATATGTAATGAAGAACCAGTTCAGTGCAATAGAACTTTGTCAAGTGAGGTATCATTATCTGAAGACGA CGATGAAGTCACCGACTCGAAAATCAAAGCTTTTCTAGATGATAAGGCCTTGGAACTGAAAAAGCTACAAACACCTCTCTACGAAGAATTCTACAATAGC ATGATCCCGGCGAGCTCTCCAAGTCTCTGTGAGAGCTTGCGCCAAGAAACTCCTTCTCCAAATTACTTGAAGTTGCCCCCTAAAAGCAAGTCACCTAGTA GAGTTCCTGTGGGGATATCCTCCCCAGTAACAGATGCGGGCTGTACTGAAAGCCCTAGGAGTACTGGCTGTAACACTGATAATGCAAACGATGAAGCTTC AAAAGCTGTTTCTTCTCCACAAATTGATGCTCAGTCGGAATCCAGTAGCCCTGGTGTTGGATTTGCAGAGAGACAAAGGAAATGGAAAGAAGAGCTTGCT GAAGAGCTTGAGCGACAACGAGAGATGAAGAGGCAGGCAGGCTCGGCAGCAAAAACATCATCCCCAAAAGATCGAGTTGTGAACAAACAAAGGGAAAAGA CCCGGTTCGCGACATCTCCAGCCAAGTAG
AA sequence Show only first row Show all	>Lus10015185 pacid=23149562 polypeptide=Lus10015185 locus=Lus10015185.g ID=Lus10015185.BGIv1.0 annot-version=v1.0 MQDFIGSVRRSFVFRPDSEGSSSSTHSVLSPPPHPLVDKINSCIRKSRIFTKPSPSSLPAPPPIRYRKGELIGCGAFGHVYMGMNLDSGELLAIKQVLIP ANGVTKEKAQAHVKELEEEVKLLKNLSHSNIVRYLGTVREEGSLHILLEFVPGGSISSLLGKFGPFPQAVIRTYTEQLLLGLEYLHNNGIMHRDIKGANI LVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVIRQTGHSFSADIWSVGCTVIEMATGKPPWSQKYEEVAALFHIGSTKSHPEIPEHLSDE AKDFLLKCLQKEPNMRLNASELLKHPFVTGEHGVSDTTSLTPQSKSTHVDIREVPSVSGSDDLCNLGSMNYSINLQNSSETQHLWRENDGDNDMCQVDSD LCASNKIPILTSGQFYNNQNVEQGFVGDLMGKFNECVEPDQGVRICNEEPVQCNRTLSSEVSLSEDDDEVTDSKIKAFLDDKALELKKLQTPLYEEFYNS MIPASSPSLCESLRQETPSPNYLKLPPKSKSPSRVPVGISSPVTDAGCTESPRSTGCNTDNANDEASKAVSSPQIDAQSESSSPGVGFAERQRKWKEELA EELERQREMKRQAGSAAKTSSPKDRVVNKQREKTRFATSPAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10015185 [exp]	0	1
AT1G50710			unknown protein		Lus10043109 [exp]	3.6	0.8594
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10002178 [exp]	9.8	0.8114
AT4G32780			phosphoinositide binding (.1)		Lus10009508 [exp]	11.4	0.8310
AT3G33530			Transducin family protein / WD...		Lus10019403 [exp]	12.2	0.8399
AT3G17900			unknown protein		Lus10013273 [exp]	15.2	0.7968
AT2G41820			Leucine-rich repeat protein ki...		Lus10007543 [exp]	16.9	0.7888
AT4G00752			UBX domain-containing protein ...		Lus10036564 [exp]	16.9	0.8204
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10031506 [exp]	17.2	0.7753
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10025873 [exp]	26.2	0.7901
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10005881 [exp]	26.5	0.7811

Compare expression of checked genes

Lus10015185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.