Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27540 927 / 0 MIRO1, EMB2473 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) AT3G63150 775 / 0 ATCBG, MIRO2 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) AT3G05310 698 / 0 MIRO3 MIRO-related GTP-ase 3 (.1) AT4G35020 66 / 4e-12 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT2G44690 65 / 1e-11 ARAC9, AtROP8, ROP8 RHO-RELATED PROTEIN FROM PLANTS 8, Arabidopsis RAC-like 9 (.1) AT4G28950 61 / 2e-10 ATRAC7, ARAC7, ATROP9, ROP9 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1) AT1G20090 61 / 3e-10 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT3G51300 60 / 5e-10 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT4G35950 60 / 6e-10 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1) AT1G75840 59 / 6e-10 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031508 [exp] 1210 / 0 AT5G27540 951 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10029934 [exp] 1102 / 0 AT5G27540 971 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10004474 [exp] 1089 / 0 AT5G27540 970 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10022034 [exp] 830 / 0 AT3G63150 891 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Lus10042575 [exp] 821 / 0 AT3G63150 892 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Lus10034538 [exp] 64 / 2e-11 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10034932 [exp] 61 / 3e-10 AT4G28950 362 / 1e-129 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1) Lus10025959 [exp] 61 / 3e-10 AT2G17800 355 / 2e-126 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Lus10002181 [exp] 61 / 4e-10 AT4G35020 320 / 8e-113 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G023100 [exp] 1066 / 0 AT5G27540 932 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Potri.005G033700 [exp] 1031 / 0 AT5G27540 937 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Potri.005G209000 [exp] 868 / 0 AT3G63150 847 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Potri.009G134600 [exp] 63 / 4e-11 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.018G083400 [exp] 62 / 1e-10 AT4G28950 393 / 2e-141 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1) Potri.015G073000 [exp] 61 / 2e-10 AT5G62880 354 / 7e-126 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) Potri.014G051800 [exp] 60 / 4e-10 AT4G35020 324 / 3e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.004G174900 [exp] 60 / 6e-10 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.002G019500 [exp] 58 / 2e-09 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.005G110700 [exp] 58 / 2e-09 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF08356 [flax] [poplar] EF_assoc_2 EF hand associated CL0023 [flax] [poplar] P-loop_NTPase PF08477 [flax] [poplar] Roc Ras of Complex, Roc, domain of DAPkinase CL0023 [flax] [poplar] PF08355 [flax] [poplar] EF_assoc_1 EF hand associated
Representative CDS sequence Show only first row Show all	>Lus10015186 pacid=23149604 polypeptide=Lus10015186 locus=Lus10015186.g ID=Lus10015186.BGIv1.0 annot-version=v1.0 ATGTCGAGAGCAGCTTCCGCAGGAGCGTCGTCGAGCTCGACCGCCGCCGGCGGGAAGACCGGCGTCCGAATTGTTGTAGTTGGTGACCGTGGAACCGGGA AGTCTAGCTTGATAATCACTGCCGCCGTCGACCAGTTCCCCGCCACTATCCCGCCTGTCCTCCCTCCGACTAGACTTCCTGAGGATTTCTACCCCGACCG CGTTCCCGTCACCATCATTGATACTTCTTCCAAGTTGGAGGATAGTGAGAAAGTTGCGGAGGAACTAAAGCGAGCAGACGCAGTTGTTCTAACTTATGCA TGTGATAAGACTGAGACTCTTGATCGTCTGAGTACATTCTGGTTGCCTAAGCTTCGGCAGTTGGAGGTGAAGGTACCGGTTATAGTTGTCGGTTGCAAAC TAGATTTAAGAGATGCGGTCCAGCAGGTGAGCTTGGAGCAAGTGATGTCACCTATAATGCAACAGTTCAGAGAGATTGAAACCTGTATTGAGTGTTCGGC GGTTAGACATATTCAGATTCCTGAGGTTTTCTATTATGCACAAAAGGCAGTACTTCATCCTACTGGCCCTCTATTTGATCAGGAATCGCAAACGCTGAAG CCAAGGTGTGTCCGAGCCTTGAAACGGATATTTATTCTGTGTGACCAAGACAGAGATGGTGCCCTTAGTGATGCAGAATTAAATGATTTTCAGGTCAAAT GTTTCAATGCTCCGTTGCAACCTTCAGAAATCGTCGGTGTGAAGAGGGTTGTTGAAGAAAAGTTGCCTAGTGTAGGAACTACTGATGGAGGAGTCAATGA ACGTGGTCTGACGTTAACTGGTTTCCTCTTTCTCCATGCTCTATTCATTGAGAAGGGGCGTCTTGAGACAACTTGGACTGTCCTTAGAAAATTTGGCTAC AGCAATGATATAAAACTCGACGATGAATTAATTCCATCATTTAAACTAGCTCCTGATCAGAGTGCCGAGCTTACAAGCGAAGCTATTGATTTCTTAAAGG GGATCTACGAATTATTTGACAGTGATTATGATAATAACCTTCGGGCTACTGAGCTGGATGACATATTTTCTACTGCACCAGAAAGTCCGTGGGATGAACT TCCATACAAAGATGCTGCAGAGAAAACTGCACTGGGAGGCATGTCAGTTGAAGCGTTCTTATCTGAGTGGGCCCTGATGACACTTGTAGATCCATCTCGG GCTGTGGAGAACCTGATTTACATTGGATATCAAGGAGATCCTTCTACTGCTGTCCGCTTGACAAGGAAAAGGCGTGTGGACCGGAAGAAGCAACAGTCAG AAAGAAATGTTTTCCAGTGCTTTGTCTTTGGACCGAAGAAGAGTGGAAAGACGTCCTTGTTGAATTCTTTTATTAAGCGACCTTGTCCTGATAGTCATGT TTCAACAACTCGGGAGAAGTTTGCTGTGAACGTTGTCGATCTTCCTGGTGGAACCACAAAAACCCTTGTGCTGAGGGAGATTCCTGAAGATGACGTAAAG GGCATGCTCTCAAATAAAGAGTCTTTAGCATCATGTGACATTGCAGTGTTCGTATATGACAGCTCTGATGAATCCTCGTGGAAGAGAACAACTCAATTGT TAGTGGACGTTGCTGGTCAAGGGGAGCATACGGGCTACGAGGTGCCTTGCCTGATAGTTGCAGCCAAAGACGACCTTAGTTCATTCCCAATGGCGATACA GGAGTCTACCAGGGTCACTCAAGATATGGGAATCGAAGCTCCAATCCCCATAAGCTCGAGAATGGGGGATACGAACAATGTCTTCGGCAGGATCATCAAT GCAGCCGAGCATCCACACCTGAGCATTCCTGAAACCGAAGCTGGAAAAAGCCGCAAACAACCCCACCGTATCATGACCCGCTCGTTAATGTTTGTCTCAG GGCTGCCTATGAGCCGAGCTGTTTTACATTTTGGCAAGGCTCGAGCAGAGCTCAAGTTTGAGCTCGAATAA
AA sequence Show only first row Show all	>Lus10015186 pacid=23149604 polypeptide=Lus10015186 locus=Lus10015186.g ID=Lus10015186.BGIv1.0 annot-version=v1.0 MSRAASAGASSSSTAAGGKTGVRIVVVGDRGTGKSSLIITAAVDQFPATIPPVLPPTRLPEDFYPDRVPVTIIDTSSKLEDSEKVAEELKRADAVVLTYA CDKTETLDRLSTFWLPKLRQLEVKVPVIVVGCKLDLRDAVQQVSLEQVMSPIMQQFREIETCIECSAVRHIQIPEVFYYAQKAVLHPTGPLFDQESQTLK PRCVRALKRIFILCDQDRDGALSDAELNDFQVKCFNAPLQPSEIVGVKRVVEEKLPSVGTTDGGVNERGLTLTGFLFLHALFIEKGRLETTWTVLRKFGY SNDIKLDDELIPSFKLAPDQSAELTSEAIDFLKGIYELFDSDYDNNLRATELDDIFSTAPESPWDELPYKDAAEKTALGGMSVEAFLSEWALMTLVDPSR AVENLIYIGYQGDPSTAVRLTRKRRVDRKKQQSERNVFQCFVFGPKKSGKTSLLNSFIKRPCPDSHVSTTREKFAVNVVDLPGGTTKTLVLREIPEDDVK GMLSNKESLASCDIAVFVYDSSDESSWKRTTQLLVDVAGQGEHTGYEVPCLIVAAKDDLSSFPMAIQESTRVTQDMGIEAPIPISSRMGDTNNVFGRIIN AAEHPHLSIPETEAGKSRKQPHRIMTRSLMFVSGLPMSRAVLHFGKARAELKFELE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10015186 [exp]	0	1
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	1.7	0.9450
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10005919 [exp]	3.5	0.9321
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10021948 [exp]	4.2	0.9359
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	6.3	0.9282
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	8.9	0.9212
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	9.5	0.9253
AT4G10970			unknown protein		Lus10023075 [exp]	10.2	0.9312
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	11.2	0.9251
AT5G62570			Calmodulin binding protein-lik...		Lus10034121 [exp]	14.1	0.8979
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	15.1	0.9089

Compare expression of checked genes

Lus10015186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.