Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33730 1028 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G28180 694 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 323 / 3e-101 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT5G63120 317 / 5e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G58570 315 / 7e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 315 / 7e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 310 / 2e-97 DEA(D/H)-box RNA helicase family protein (.1) AT1G20920 318 / 4e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 316 / 6e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01540 299 / 4e-92 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031509 [exp] 880 / 0 AT2G33730 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 321 / 3e-100 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 313 / 1e-97 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 309 / 4e-97 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 311 / 9e-97 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 310 / 4e-96 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037527 [exp] 313 / 2e-95 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015627 [exp] 304 / 4e-95 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 303 / 7e-95 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045800 [exp] 1077 / 0 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G037200 [exp] 1077 / 0 AT2G33730 1058 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G194600 [exp] 323 / 2e-99 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 319 / 2e-99 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 318 / 5e-99 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 309 / 5e-97 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 307 / 2e-93 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.002G003600 [exp] 313 / 7e-93 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.019G130900 [exp] 300 / 7e-93 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 300 / 1e-92 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10015187 pacid=23149576 polypeptide=Lus10015187 locus=Lus10015187.g ID=Lus10015187.BGIv1.0 annot-version=v1.0 ATGAACGGAAATAAGAAGCCAGTCTTCCTAACCAAAGCCGAGCGGGAGAAGCTGGCCATCCAGCGCCGGGAAGAGGAGAATGAGCTTCAGAAGAAGCGGC AGGACCAGCTTCTCGCTCAAGCGAACACTCTGAAACCTACCTCCGCGGCAGACTCCGACCGCCGCGGCGATCGCGACCGGGACGTCGATCGGGATCGTGA CAGAGACAGGGAACGAGATAGGGATCGTGACCGAGACTACAGAGATAGGGATCGCGATAGGGATAGAGATAGAGAGCGCGAGAGGGAGAGAGAAAGAGAG AGGGAAAGGGAGAGGGATAGGGGCCGGCGGGAGAGGGAGAGAGAGCGCGAGGAGGAAGCTAAGGCGAGGGAGAGAGCTCGATTGGAGAAGCTGGCTGAGC GGGAGAGGGAGAAGGAGCTGGATTTGATCAAAGATCAGTACCTAGGATCGAAGAAGCCGAAGAAGAGAGTGATTAAGCCTAGCGAGAAGTTCCGATTCTC ATTCGATTGGGAGAACACAGAGGACACTTCACGGGACATGAACGCTCTGTACCAAAACCCTCACGAGGCGCAGCTGCTCTTCGGGCGTGGGTTTCGAGCC GGAATCGACCGGAGGGAGCAGAAGAAGCTGGCAGCTAAGAATGAGAAGGAGATGAGGGATGAGATCCGTAAGAAGGATGGAATTGAAGAGAGGCCTGAGG AGGCAGCTGCGCAGAGGATGAAGGAAGAAGCTGCTGAGATGTATGATACGTTCGACATGAGAGTCGATAGGCATTGGTCTGATAAGAAGCTGGAGGAGAT GACTGAGAGGGATTGGAGGATATTCAGGGAGGATTTCAACATCTCTTACAAGGGGTCGAAGATTCCTCGGCCGATGAGGAGCTGGATGGAGAGTAAGCTG ACTCCTGAGCTGCTGAAAGCTGTGGAGAGAGCTGGTTACAAGAAGCCATCTCCGATTCAGATGGCTGCAATCCCACTGGGTTTACAGCAGCGTGACGTTA TTGGAATTGCAGAGACTGGTTCTGGTAAGACTGCTGCTTTTGTTTTGCCTATGTTGACTTACATCTCTAGGTTGCCTCCCATGAGTGAGGAGAATGAAGC TGAGGGGCCTTATGCTGTAGTTATGGCACCCACTAGGGAATTAGCACAGCAGATTGAGGAAGAGACTGTTAAGTTTGCACATTACTTGGGTATCAACGTT GTCTCGATTGTCGGTGGGCAGTCGATTGAGGAGCAAGGGCTTAAGATTAGGCAAGGGTGCGAAGTAGTTATCGCAACTCCCGGTCGTTTGATCGATTGTC TGGAGAGGCGTTATGCTGTGTTGAACCAGTGCAATTATGTCGTTCTCGACGAGGCTGATCGAATGATCGATATGGGGTTTGAGCCGCAAGTGGTAGGTGT ACTGGATGCAATGCCTTCGAGCAATTTGAAACCGGAGAACGAAGATGAGGAGCTTGATTCGAAGAAGATTTACCGTACCACTTATATGTTTAGTGCCACC ATGCCTCTAGCAGTCGAGCGGCTTGCTAGGAAGTACCTTCGAAACCCTGTTGTCGTCACAATCGGTACTGCCGGTAAGGCCACCGAATTGATCTCCCAGC ATGTGATGATGGTGAAAGAATCGGAGAAGAACTCCCGGTTACAGAGGCTGCTGGACGATCTTTCCGACAGAACAGCAATTGTGTTTGTGAACACGAAAAA GACTGCAGATTTCCTCGCCAAGAATCTGGACAAGAACGGGTACCGGGTGACTACTCTCCACGGTGGGAAGTCCCAGGAGCAGAGGGAGATCAGTCTCGAA GGTTTCAGAACAAAGAGATATAACGTTCTCGTTGCTACGGATGTTGCTGGTCGTGGTATCGATATCCCCGACGTGGCTCATGTCATCAACTTCGACATGC CTGGTAACATCGAGATGTACACTCACCGTATCGGACGAACAGGACGTGCTGGAAAGACCGGTGTGGCCACGACGTTCATAACCTTGCAAGACTCTGATGT CTTCTACGACCTAAAGCAGATGCTTACCTCGAGTAACAGTCCAGTGCCCCCTGAACTCGCAAGGCACGAAGCTTCCAAGTTCAAGCCCGGGTCGATTCCC GACAGACCTCCTAGAAGAAACGACACTGTTTTCACTCACTAG
AA sequence Show only first row Show all	>Lus10015187 pacid=23149576 polypeptide=Lus10015187 locus=Lus10015187.g ID=Lus10015187.BGIv1.0 annot-version=v1.0 MNGNKKPVFLTKAEREKLAIQRREEENELQKKRQDQLLAQANTLKPTSAADSDRRGDRDRDVDRDRDRDRERDRDRDRDYRDRDRDRDRDRERERERERE RERERDRGRREREREREEEAKARERARLEKLAEREREKELDLIKDQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRA GIDRREQKKLAAKNEKEMRDEIRKKDGIEERPEEAAAQRMKEEAAEMYDTFDMRVDRHWSDKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWMESKL TPELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMSEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGINV VSIVGGQSIEEQGLKIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDSKKIYRTTYMFSAT MPLAVERLARKYLRNPVVVTIGTAGKATELISQHVMMVKESEKNSRLQRLLDDLSDRTAIVFVNTKKTADFLAKNLDKNGYRVTTLHGGKSQEQREISLE GFRTKRYNVLVATDVAGRGIDIPDVAHVINFDMPGNIEMYTHRIGRTGRAGKTGVATTFITLQDSDVFYDLKQMLTSSNSPVPPELARHEASKFKPGSIP DRPPRRNDTVFTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33730			P-loop containing nucleoside t...		Lus10015187 [exp]	0	1
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10043059 [exp]	2.0	0.9472
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10041105 [exp]	3.2	0.9171
AT1G76810			eukaryotic translation initiat...		Lus10030500 [exp]	3.2	0.9465
AT1G76820			eukaryotic translation initiat...		Lus10012856 [exp]	4.9	0.9461
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10037244 [exp]	5.0	0.9251
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10042145 [exp]	8.2	0.9041
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	8.9	0.9298
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10011434 [exp]	10.0	0.8972
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	10.2	0.9245
AT1G19480			DNA glycosylase superfamily pr...		Lus10010824 [exp]	11.0	0.9146

Compare expression of checked genes

Lus10015187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.