Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05290 448 / 1e-159 AtPNC1, PNC1 peroxisomal adenine nucleotide carrier 1 (.1) AT5G27520 439 / 4e-156 AtPNC2, PNC2 peroxisomal adenine nucleotide carrier 2 (.1) AT2G39970 82 / 1e-17 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT5G66380 73 / 1e-14 ATFOLT1 folate transporter 1 (.1) AT1G25380 66 / 7e-12 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT4G32400 53 / 1e-07 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT1G34065 50 / 1e-06 SAMC2 S-adenosylmethionine carrier 2 (.1) AT5G51050 43 / 0.0003 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G42130 42 / 0.0005 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT5G13490 41 / 0.0008 AAC2 ADP/ATP carrier 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031510 [exp] 591 / 0 AT3G05290 474 / 8e-170 peroxisomal adenine nucleotide carrier 1 (.1) Lus10010517 [exp] 407 / 3e-143 AT3G05290 437 / 2e-155 peroxisomal adenine nucleotide carrier 1 (.1) Lus10034055 [exp] 390 / 1e-136 AT3G05290 427 / 3e-151 peroxisomal adenine nucleotide carrier 1 (.1) Lus10014839 [exp] 92 / 6e-21 AT2G39970 481 / 5e-172 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10009886 [exp] 89 / 5e-20 AT2G39970 484 / 2e-173 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10028339 [exp] 60 / 3e-10 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10034104 [exp] 59 / 1e-09 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10001463 [exp] 48 / 4e-06 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10016417 [exp] 45 / 5e-05 AT5G13490 602 / 0.0 ADP/ATP carrier 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033800 [exp] 478 / 1e-171 AT3G05290 433 / 1e-153 peroxisomal adenine nucleotide carrier 1 (.1) Potri.013G023200 [exp] 469 / 4e-168 AT3G05290 449 / 5e-160 peroxisomal adenine nucleotide carrier 1 (.1) Potri.010G092100 [exp] 412 / 2e-145 AT5G27520 449 / 6e-160 peroxisomal adenine nucleotide carrier 2 (.1) Potri.010G192600 [exp] 89 / 4e-20 AT2G39970 460 / 7e-164 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.002G000200 [exp] 77 / 9e-16 AT2G39970 389 / 3e-135 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.008G064800 [exp] 77 / 1e-15 AT2G39970 393 / 2e-137 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 67 / 1e-12 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.014G125600 [exp] 59 / 1e-09 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.005G189600 [exp] 53 / 1e-07 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.002G200900 [exp] 52 / 1e-07 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10015188 pacid=23149509 polypeptide=Lus10015188 locus=Lus10015188.g ID=Lus10015188.BGIv1.0 annot-version=v1.0 ATGGGCGGCGGGGTTGATCTGGAATCTATAGCGGAGGCCACCTCTGGAGCGATAGGATCGCTGCTTAGCACCACCATACTGTACCCGCTTGACACCTGTA AGACCAAGTACCAAGCAGAAGCTCGCTCTCATGGCCACCGCAAATACAGACATCTATCAGATGTATTATGGGAAGCAATATCCAACGGCCAGTACCTGTC ACTATACCAAGGCTTAACGACGAAGAATCTCCAGTCATTCATCTCGCAGTTTGTCTACTTCTACGGCTACAGCTACTTCAAAAGGCTGTACCTGGAGAAG AGCGGTTCGAAGAAGATTGGAACCAAGGCTAACTTGCTTGTTGCAGCTGCTGCAGGGGCGTGCACAGCCATTGCCACACAGCCATTAGACACGGCCTCCT CGAGGATGCAGACAAGCGCATTTGGCAAATCGAAAGGGCTGTGGGAGACGCTGACCGAAGGCGAGTGGAGCAATGCTTTCGATGGCCTCGGTATCTCTCT TTTGCTGACGTCAAACCCTGCCATTCAGTATACAGTGTTTGATCAGCTGAAACAAAAGCTTCTAAAGGGGAATCAAGCAGAAACCCTTTCTGCATCCACA GCGTTTCTTCTCGGTGCATTGTCGAAAAGTATCGCTACATTCTTAACATACCCGGCTATCAGGTGTAAGGTGATGATTCAAGCAGCAGACACCGACGAGG CTGGCCACAACGAAGACTCTAAAATGAAACCGAAACGCAGACCGAGCAAAACGCTGTCTGGTGTAGTGGTTTCCGTCTGGAAGCAGGAAGGAATTTCAGG GTTCTTCAAGGGGTTAAAAGCTCAGATCTTGAAGACAGTACTGAGCTCAGCTTTGCTTCTGATGATCAAGGAGAAGATCACTGCAACTACTTGGGTCCTT ATACTTGCAATCAGAAGGTCCCTTCTGGTTTCGAATGGTAGGCTAAAGAATGCTTAA
AA sequence Show only first row Show all	>Lus10015188 pacid=23149509 polypeptide=Lus10015188 locus=Lus10015188.g ID=Lus10015188.BGIv1.0 annot-version=v1.0 MGGGVDLESIAEATSGAIGSLLSTTILYPLDTCKTKYQAEARSHGHRKYRHLSDVLWEAISNGQYLSLYQGLTTKNLQSFISQFVYFYGYSYFKRLYLEK SGSKKIGTKANLLVAAAAGACTAIATQPLDTASSRMQTSAFGKSKGLWETLTEGEWSNAFDGLGISLLLTSNPAIQYTVFDQLKQKLLKGNQAETLSAST AFLLGALSKSIATFLTYPAIRCKVMIQAADTDEAGHNEDSKMKPKRRPSKTLSGVVVSVWKQEGISGFFKGLKAQILKTVLSSALLLMIKEKITATTWVL ILAIRRSLLVSNGRLKNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	0	1
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	1.0	0.9728
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10006982 [exp]	2.4	0.9618
AT3G51520			diacylglycerol acyltransferase...		Lus10039135 [exp]	3.2	0.9584
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	4.7	0.9627
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	5.7	0.9571
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	6.0	0.9574
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	6.0	0.9555
AT4G06534			unknown protein		Lus10024806 [exp]	6.2	0.9517
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	7.0	0.9574
AT4G28400			Protein phosphatase 2C family ...		Lus10008556 [exp]	7.1	0.9537

Compare expression of checked genes

Lus10015188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.