Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27490 464 / 4e-167 Integral membrane Yip1 family protein (.1) AT3G05280 437 / 2e-156 Integral membrane Yip1 family protein (.1) AT2G39805 174 / 3e-53 Integral membrane Yip1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031511 [exp] 563 / 0 AT5G27490 462 / 3e-166 Integral membrane Yip1 family protein (.1) Lus10029935 [exp] 523 / 0 AT5G27490 473 / 8e-171 Integral membrane Yip1 family protein (.1) Lus10004473 [exp] 521 / 0 AT5G27490 474 / 4e-171 Integral membrane Yip1 family protein (.1) Lus10004695 [exp] 150 / 6e-44 AT2G39805 324 / 2e-112 Integral membrane Yip1 family protein (.1.2) Lus10001020 [exp] 144 / 7e-41 AT2G39805 322 / 1e-110 Integral membrane Yip1 family protein (.1.2) Lus10030159 [exp] 112 / 2e-29 AT2G39805 256 / 6e-85 Integral membrane Yip1 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033900 [exp] 470 / 2e-169 AT5G27490 468 / 2e-168 Integral membrane Yip1 family protein (.1) Potri.013G023400 [exp] 450 / 1e-161 AT5G27490 423 / 6e-151 Integral membrane Yip1 family protein (.1) Potri.008G060300 [exp] 176 / 6e-54 AT2G39805 335 / 1e-116 Integral membrane Yip1 family protein (.1.2) Potri.010G198300 [exp] 175 / 1e-53 AT2G39805 321 / 9e-111 Integral membrane Yip1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [flax] [poplar] Yip1 PF04893 [flax] [poplar] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Lus10015189 pacid=23149496 polypeptide=Lus10015189 locus=Lus10015189.g ID=Lus10015189.BGIv1.0 annot-version=v1.0 ATGATGTCCGGTAACTATACGCCGATCGACAATCAGAAGGTCTCCGGATCTGTGCCTGCGGTTACCAATCAAGGCCATATTCCAGTCCAGTTCGCAGAGT CGAATCTGCAAACGTTTCCACCTTCTGTCGCTCAGGGGAAGATCAGTGGTGGATCCAGGCCTCCTCGTGATGCTGACGATTCGTTTTCAAAACCCATCAA TGGTTCTACTGATGCACCCCAACAGCAAGGCGGCTGGCTGCGAGCATTCTCAGTTGCTGCTTACAAGCCATACTTTGATGTCGATACCATAGATGTTTTA GAGCGGATCAAAGATTCACTTCTCCCATTCAATGGATCCTTCACTGAGAAAACTGCTGAAAAGCCAGACTTGTACGGACCGTTCTGGATATGTACCACCC TAATCTTCGTGGCAGCTTCGATAAGCACAATTGTGGCATATGTAGCACACAAGGTTCAAAAGAAAGAATGGAACTATGATATCAACGTCGTGACATGGTC TGCTGGCTTGTTCTACGGATATGTAACACTCATTCCCCTCGTTCTCTATGTGATCCTCAAGTACTTCTCAACACCATCAGGACTTGTGCAGCTATTCTGT CTCTATGGCTACTCCCTATTCATCTTCATCCCAACACTGTGTCTCTCCGTCGTACCCTTGGAGATCTTCAGGTGGGTAGTTGCAGGCGTCGCAGGGTTCA TGTCGGCGTCCTTTGTTGCGCTGAACCTTCGAGCCCATATCTTATCGGCAGGCGAGAGGTGGGTGTTGATCGTCGCTGGCATATTTCTGCTGCAGCTCGG ACTATCTGTCGTGTTGAAGATGTACCTCTTCACCATCACGGTATAA
AA sequence Show only first row Show all	>Lus10015189 pacid=23149496 polypeptide=Lus10015189 locus=Lus10015189.g ID=Lus10015189.BGIv1.0 annot-version=v1.0 MMSGNYTPIDNQKVSGSVPAVTNQGHIPVQFAESNLQTFPPSVAQGKISGGSRPPRDADDSFSKPINGSTDAPQQQGGWLRAFSVAAYKPYFDVDTIDVL ERIKDSLLPFNGSFTEKTAEKPDLYGPFWICTTLIFVAASISTIVAYVAHKVQKKEWNYDINVVTWSAGLFYGYVTLIPLVLYVILKYFSTPSGLVQLFC LYGYSLFIFIPTLCLSVVPLEIFRWVVAGVAGFMSASFVALNLRAHILSAGERWVLIVAGIFLLQLGLSVVLKMYLFTITV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27490			Integral membrane Yip1 family ...		Lus10015189 [exp]	0	1
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10033733 [exp]	11.0	0.8497
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Lus10041069 [exp]	11.3	0.8534
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10025293 [exp]	12.2	0.8770
AT5G53340			Galactosyltransferase family p...		Lus10032350 [exp]	13.0	0.8558
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Lus10017079 [exp]	13.7	0.8480
AT1G28240			Protein of unknown function (D...		Lus10015438 [exp]	14.5	0.8433
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10005952 [exp]	19.7	0.8306
AT4G38040			Exostosin family protein (.1)		Lus10002664 [exp]	20.8	0.8463
AT2G01070			Lung seven transmembrane recep...		Lus10005732 [exp]	22.4	0.8568
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10040847 [exp]	23.2	0.8662

Compare expression of checked genes

Lus10015189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.