Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15570 79 / 6e-17 Phototropic-responsive NPH3 family protein (.1) AT1G52770 78 / 1e-16 Phototropic-responsive NPH3 family protein (.1) AT5G67440 72 / 1e-14 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT3G08660 65 / 3e-12 Phototropic-responsive NPH3 family protein (.1) AT3G26490 64 / 7e-12 Phototropic-responsive NPH3 family protein (.1) AT3G08570 63 / 2e-11 Phototropic-responsive NPH3 family protein (.1) AT2G14820 61 / 7e-11 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT5G48800 56 / 3e-09 Phototropic-responsive NPH3 family protein (.1) AT2G47860 54 / 1e-08 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G03250 53 / 4e-08 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015169 [exp] 326 / 2e-108 AT5G64330 264 / 7e-79 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10026046 [exp] 82 / 5e-18 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 81 / 8e-18 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 68 / 4e-13 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 63 / 2e-11 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 61 / 1e-10 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037848 [exp] 60 / 1e-10 AT3G15570 343 / 1e-115 Phototropic-responsive NPH3 family protein (.1) Lus10011082 [exp] 58 / 8e-10 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 55 / 1e-08 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G024400 [exp] 138 / 4e-38 AT5G10250 331 / 5e-106 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.005G075400 [exp] 83 / 2e-18 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G175400 [exp] 81 / 1e-17 AT1G52770 507 / 8e-179 Phototropic-responsive NPH3 family protein (.1) Potri.003G058800 [exp] 80 / 1e-17 AT3G15570 499 / 1e-175 Phototropic-responsive NPH3 family protein (.1) Potri.007G093000 [exp] 80 / 3e-17 AT5G10250 706 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 76 / 4e-16 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.013G073700 [exp] 76 / 6e-16 AT5G17580 409 / 4e-137 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 72 / 9e-15 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.010G223600 [exp] 67 / 4e-13 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 64 / 6e-12 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10015190 pacid=23149513 polypeptide=Lus10015190 locus=Lus10015190.g ID=Lus10015190.BGIv1.0 annot-version=v1.0 ATGGTGCATCAGGACTGCGAAAGGGGAGACTTGACTTCGAATCGATGGCTCGAAGAGGTTGCTTCTCTGCGAATCGATCATTTCGTTCGAGTTGTTGAGT CAATGAAGTGGGAAGGAATGAAGCCAGAGATTGTAAGCTCATTTTTGGAACATTGGCTCTTGAAAGGGTCTCACCGGCTAGAAAATCTAACAATTGAGAC ACTGAAAGTTGCCATAGAAGGACTGATAAGGCTGCTTCCTGAGCAAGAAACCTCTATACCTTGCAACATTCTGCTTTATCTTCTCAAGCTTGGAACTTCC ATACGAGCCGACCCAGAGCTATTAGCGAGGAGTGAGGCGAGAGCGGTTCGTAAGCTAGATGGTTGTAGAATTTCGGACCTCCTGGTTCGAAATTCTACGG GAGTCGGTGCTCTGTATGATGTGGAAATTGTTGCCAGAGTTGTGAAAGCATATGTTGCTTGTGTTGCAAGTAACCCAACATCGGGGTTGCCTAATGTTGG AAGATTGGTTGATAAGTATTTGTGTTCGCGTACTTCTGCTTGGCGTACTCCTCCGCTGAAACAGCGGCAGCGAAGCGATTCCTCATTATCCTTTTTCTTA TTCTTGACAATTGACTAA
AA sequence Show only first row Show all	>Lus10015190 pacid=23149513 polypeptide=Lus10015190 locus=Lus10015190.g ID=Lus10015190.BGIv1.0 annot-version=v1.0 MVHQDCERGDLTSNRWLEEVASLRIDHFVRVVESMKWEGMKPEIVSSFLEHWLLKGSHRLENLTIETLKVAIEGLIRLLPEQETSIPCNILLYLLKLGTS IRADPELLARSEARAVRKLDGCRISDLLVRNSTGVGALYDVEIVARVVKAYVACVASNPTSGLPNVGRLVDKYLCSRTSAWRTPPLKQRQRSDSSLSFFL FLTID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015190 [exp]	0	1
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	4.2	0.9307
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10033427 [exp]	5.0	0.9546
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10034980 [exp]	6.0	0.9067
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10035525 [exp]	7.1	0.9516
					Lus10003755 [exp]	9.5	0.9434
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	11.0	0.9407
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	13.0	0.9406
AT1G76750			Protein of unknown function (D...		Lus10025591 [exp]	16.2	0.6374
					Lus10038295 [exp]	16.5	0.9285
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019195 [exp]	17.9	0.9227

Compare expression of checked genes

Lus10015190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.