Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05580 398 / 5e-139 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G27840 392 / 1e-136 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT2G29400 323 / 1e-109 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT2G39840 323 / 1e-109 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT5G59160 323 / 2e-109 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT3G46820 320 / 3e-108 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT1G64040 317 / 3e-107 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 315 / 4e-106 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G43380 300 / 2e-100 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT1G10430 159 / 8e-46 PP2A-2 protein phosphatase 2A-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031489 [exp] 454 / 1e-160 AT3G05580 565 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10029882 [exp] 401 / 5e-140 AT3G05580 555 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10020659 [exp] 405 / 3e-139 AT3G05580 562 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10042559 [exp] 331 / 4e-112 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10022019 [exp] 330 / 7e-111 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004989 [exp] 323 / 3e-109 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004692 [exp] 322 / 6e-109 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10016489 [exp] 321 / 1e-108 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10040259 [exp] 319 / 6e-108 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G024100 [exp] 374 / 2e-129 AT5G27840 553 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.013G014700 [exp] 369 / 4e-127 AT3G05580 563 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.019G018000 [exp] 330 / 3e-112 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.013G045900 [exp] 330 / 4e-112 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.010G197600 [exp] 323 / 2e-109 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G245700 [exp] 322 / 3e-109 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.009G037700 [exp] 321 / 7e-109 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.008G060800 [exp] 320 / 3e-108 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G166300 [exp] 320 / 4e-108 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G098600 [exp] 315 / 2e-106 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10015192 pacid=23149542 polypeptide=Lus10015192 locus=Lus10015192.g ID=Lus10015192.BGIv1.0 annot-version=v1.0 ATGATGACGATGGAAGGGATGATGGAGAAAGGAGCGGTGGACGATATTATACGGCGGCTTTTGGGAGGGGAAGGGGGAGGGAAACAGGTTCAGCTATCGG AATGTGAGATCCGTCAATTGTGTGTTAATGCTCGTCAGATTTTCCTCTCCCAGCCTACTCTCGTCGAGATCAAAGCTCCGATTCGAATCTGCGGAGGCAT TAAAAAAACCGTGGTGACATACACGGACAATACCAAGACCTTCTCAAGCTATTCGAGTACGGAGGCTACCCGCCTTCGGCGAACTACCTATTCCTCGGAG ACTACGTCGACAGAGGCAAGCAAAGCTTGGAGACCATATGCCTACTCCTGGCCTACAAAATCCGGTACCCGGACCAAGTCCACCTACTCCGAGGCAACCA CGAGGACGCGAAGATCAACCGGATATACGGGTTCTACGACGAAGATCAATCGGATATACGGGTTCTACGACGAGTGCAAACGAAGGTTCAACGTCAGGCT ATGGAAGATATTCACAGACTGTTTCAACTCCTTACCGGTCTCAGCCCTCATCGACGAGAAGATACTCTGTATGCACGGGGGACTCTCCCCCGACTTGGAG AGTTTGGATCAGATCAGAGAGATCGAAAGGCCTACTGAGGTTCCAGACGCTGGTCTCCTCTGTGACTTGCTCTGGTCCGATCCACACTCCACCAACGAAG GGTGGGGTAACAGCGACCGGGGAGTCTCGAGCACGTTCGGTGCTGATGTGGTTGCGGAGTTCCTTGATAAGGCCGATCTCGATCTCATCTGTAGAGGGCA CCAGGTAACTTGCAATGCAAGGCAAGATTGTGAAAGTTCTACTTCCCTTTTGAGTAACTTGCAATGCAAGTCATTGTCATTTGATGTTCATGGCCATTTT TCGGGGGGTTCGGATTGGCAGGTGGTGGAAGACGGGTACGAGTTCTTCGCGGAGAGACGGCTAGTGACAATATTCTCGGCACCAAACTATGGAGGGGAGT TCGACAACGCCGGAGCGTTATTGAGTGTGGATGAGTCTCTGGTTTGTTCCTTTGAGATATTGAAACCAGCTGTTAACAGTTCAAAGTTCCCCCTTAAGAA GCCTTCTAGAACTGGTTAA
AA sequence Show only first row Show all	>Lus10015192 pacid=23149542 polypeptide=Lus10015192 locus=Lus10015192.g ID=Lus10015192.BGIv1.0 annot-version=v1.0 MMTMEGMMEKGAVDDIIRRLLGGEGGGKQVQLSECEIRQLCVNARQIFLSQPTLVEIKAPIRICGGIKKTVVTYTDNTKTFSSYSSTEATRLRRTTYSSE TTSTEASKAWRPYAYSWPTKSGTRTKSTYSEATTRTRRSTGYTGSTTKINRIYGFYDECKRRFNVRLWKIFTDCFNSLPVSALIDEKILCMHGGLSPDLE SLDQIREIERPTEVPDAGLLCDLLWSDPHSTNEGWGNSDRGVSSTFGADVVAEFLDKADLDLICRGHQVTCNARQDCESSTSLLSNLQCKSLSFDVHGHF SGGSDWQVVEDGYEFFAERRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEILKPAVNSSKFPLKKPSRTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10015192 [exp]	0	1
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10039078 [exp]	1.0	0.9568
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10021259 [exp]	3.3	0.8966
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	5.5	0.9041
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	5.5	0.8970
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	6.9	0.9144
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10028638 [exp]	8.9	0.8983
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10021460 [exp]	9.4	0.8581
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Lus10021283 [exp]	9.7	0.8572
AT1G24030			Protein kinase superfamily pro...		Lus10029187 [exp]	9.8	0.9133
AT3G15480			Protein of unknown function (D...		Lus10043091 [exp]	11.2	0.9137

Compare expression of checked genes

Lus10015192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.