Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56220 105 / 5e-30 Dormancy/auxin associated family protein (.1.2.3.4) AT1G54070 48 / 7e-08 Dormancy/auxin associated family protein (.1) AT1G28330 46 / 4e-07 DYL1, DRM1 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5) AT5G44300 37 / 0.001 Dormancy/auxin associated family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031488 [exp] 144 / 5e-45 AT1G56220 136 / 3e-42 Dormancy/auxin associated family protein (.1.2.3.4) Lus10020661 [exp] 106 / 3e-30 AT1G56220 126 / 2e-38 Dormancy/auxin associated family protein (.1.2.3.4) Lus10029881 [exp] 103 / 5e-27 AT5G27830 245 / 9e-80 unknown protein Lus10025446 [exp] 49 / 2e-08 AT2G33830 82 / 4e-22 Dormancy/auxin associated family protein (.1.2) Lus10013180 [exp] 49 / 1e-07 AT1G54070 78 / 5e-19 Dormancy/auxin associated family protein (.1) Lus10008142 [exp] 47 / 2e-07 AT1G54070 65 / 1e-14 Dormancy/auxin associated family protein (.1) Lus10015318 [exp] 44 / 3e-06 AT1G28330 117 / 2e-35 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5) Lus10013997 [exp] 42 / 1e-05 AT1G28330 119 / 4e-36 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5) Lus10015418 [exp] 42 / 1e-05 AT1G28330 120 / 7e-37 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G014900 [exp] 97 / 2e-26 AT1G56220 97 / 7e-27 Dormancy/auxin associated family protein (.1.2.3.4) Potri.005G024250 [exp] 90 / 3e-24 AT1G56220 86 / 2e-23 Dormancy/auxin associated family protein (.1.2.3.4) Potri.003G070500 [exp] 59 / 7e-12 AT1G54070 90 / 6e-24 Dormancy/auxin associated family protein (.1) Potri.001G164800 [exp] 52 / 4e-09 AT1G54070 67 / 3e-15 Dormancy/auxin associated family protein (.1) Potri.004G047100 [exp] 47 / 5e-07 AT1G28330 122 / 7e-37 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05564 [flax] [poplar] Auxin_repressed Dormancy/auxin associated protein
Representative CDS sequence Show only first row Show all	>Lus10015193 pacid=23149555 polypeptide=Lus10015193 locus=Lus10015193.g ID=Lus10015193.BGIv1.0 annot-version=v1.0 ATGAGTCTTCTTGACCAGCTGTGGGACGACACCGTCGCCGGTCCAAGGCCGGACAGCGGCCTCGGCAAGCTCCGCAAGCACAGAACCTTCGGTTTCCGAT CGGCCACCGGCAACGATTCCGATGGAGGCGGGAGCGTGAAATCGTACTCCGGCGGTGATGAAGCAGCAGCAGCAGCGCCAGAGGAATCTACGAGAGTGAC ACGCAGTATCATGATAGTGAGGCCGCCGGGTTACCAGAGCGGATCTACTCCCCCGGCGTCTCCTGCCGGATCTACTCCTCCCGTGTCTCCATTTTCCGGA AGCAGCAGAGGCTCATTCAGGTTCCGGAGAAGGTCAGCATCGGATGCAGCATTCGAGAAGGAGGCGGCTGCTGCCACCGCTGCAGGAAGCCCAGTTGGAC CAAGGAGCTCTTCTTCTCCTTACGACGTTTGA
AA sequence Show only first row Show all	>Lus10015193 pacid=23149555 polypeptide=Lus10015193 locus=Lus10015193.g ID=Lus10015193.BGIv1.0 annot-version=v1.0 MSLLDQLWDDTVAGPRPDSGLGKLRKHRTFGFRSATGNDSDGGGSVKSYSGGDEAAAAAPEESTRVTRSIMIVRPPGYQSGSTPPASPAGSTPPVSPFSG SSRGSFRFRRRSASDAAFEKEAAAATAAGSPVGPRSSSSPYDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56220			Dormancy/auxin associated fami...		Lus10015193 [exp]	0	1
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	2.8	0.8086
AT1G16250			Galactose oxidase/kelch repeat...		Lus10013899 [exp]	5.5	0.8020
AT2G46690			SAUR-like auxin-responsive pro...		Lus10008845 [exp]	7.2	0.8007
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10013243 [exp]	8.5	0.7482
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10022514 [exp]	9.8	0.8072
AT1G53210			sodium/calcium exchanger famil...		Lus10028144 [exp]	13.3	0.7554
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10027148 [exp]	17.9	0.7910
AT5G28150			Plant protein of unknown funct...		Lus10042600 [exp]	18.2	0.7358
AT5G56190			Transducin/WD40 repeat-like su...		Lus10021975 [exp]	19.1	0.7400
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Lus10016011 [exp]	20.9	0.7630

Compare expression of checked genes

Lus10015193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.