Plant FIBer expression Database

Lus10015194 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G27820 120 / 1e-36 Ribosomal L18p/L5e family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031487
[exp]
155 / 2e-50 AT5G27820 184 / 1e-61 Ribosomal L18p/L5e family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G100900
[exp]
120 / 3e-36 AT5G27820 155 / 3e-50 Ribosomal L18p/L5e family protein (.1)
Potri.005G068300
[exp]
58 / 2e-12 AT5G27820 68 / 2e-16 Ribosomal L18p/L5e family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0267 S11_L18p PF00861 Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Representative CDS sequence
>Lus10015194 pacid=23149531 polypeptide=Lus10015194 locus=Lus10015194.g ID=Lus10015194.BGIv1.0 annot-version=v1.0
ATGGTGATTCCACCAGCAATGAGACCACCAAGGATCACAGAGTATCTGAAGCCCTATGTGCTGAAGATGCATTTCAGCAACAAGTATGTTTCAGCGACGG
TGGTCCACACACCAACTGCAACTGTCGCGTCCTCTGCAAGCTCGCAAGAGAAGACCCTGAGGACAGTCATGGGAAACACTCGTGATGTTGCAGCTGCTGC
CAAAATCGGTAAGCTTCTAGGAGAGCGCCTGCTGCTGAAAGGGATACCGGCTGTTTCGATTCTGCTGAAGAGGGAACAGAAGTATCACGGTAAGATCAAG
GCTATTGTTGATTCCGTTAGGGAATCTGGCGTTAAGCTTATCTAG
AA sequence
>Lus10015194 pacid=23149531 polypeptide=Lus10015194 locus=Lus10015194.g ID=Lus10015194.BGIv1.0 annot-version=v1.0
MVIPPAMRPPRITEYLKPYVLKMHFSNKYVSATVVHTPTATVASSASSQEKTLRTVMGNTRDVAAAAKIGKLLGERLLLKGIPAVSILLKREQKYHGKIK
AIVDSVRESGVKLI

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G27820 Ribosomal L18p/L5e family prot... Lus10015194
[exp]
0 1
AT4G39520 GTP-binding protein-related (.... Lus10005800
[exp]
6.9 0.9318
AT1G26910 RPL10B ribosomal protein L10 B, Ribos... Lus10010429
[exp]
9.4 0.9344
AT4G31810 ATP-dependent caseinolytic (Cl... Lus10010685
[exp]
12.6 0.9281
AT4G13850 ATGRP2, GR-RBP2 glycine rich protein 2, glycin... Lus10032591
[exp]
19.6 0.9249
AT3G27740 VEN6, CARA VENOSA 6, carbamoyl phosphate ... Lus10018639
[exp]
22.4 0.9242
AT2G13290 beta-1,4-N-acetylglucosaminylt... Lus10019400
[exp]
22.8 0.9273
AT5G08300 Succinyl-CoA ligase, alpha sub... Lus10013440
[exp]
24.0 0.9169
AT5G44500 Small nuclear ribonucleoprotei... Lus10013108
[exp]
25.5 0.9268
AT3G01280 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE D... Lus10013271
[exp]
26.1 0.9159
AT4G32690 ATGLB3, GLB3 ARABIDOPSIS HEMOGLOBIN 3, hemo... Lus10022120
[exp]
27.1 0.9164

Lus10015194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.