Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25450 122 / 6e-34 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT1G68530 120 / 8e-34 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G71160 115 / 2e-31 KCS7 3-ketoacyl-CoA synthase 7 (.1) AT1G19440 115 / 3e-31 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT4G34250 114 / 7e-31 KCS16 3-ketoacyl-CoA synthase 16 (.1) AT2G15090 112 / 2e-30 KCS8 3-ketoacyl-CoA synthase 8 (.1) AT4G34520 111 / 5e-30 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT2G16280 110 / 2e-29 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT5G49070 104 / 4e-28 KCS21 3-ketoacyl-CoA synthase 21 (.1.2) AT1G04220 105 / 1e-27 KCS2 3-ketoacyl-CoA synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031486 [exp] 206 / 1e-66 AT1G71160 450 / 1e-156 3-ketoacyl-CoA synthase 7 (.1) Lus10020662 [exp] 160 / 2e-48 AT1G71160 470 / 6e-164 3-ketoacyl-CoA synthase 7 (.1) Lus10029880 [exp] 149 / 3e-44 AT1G71160 337 / 9e-112 3-ketoacyl-CoA synthase 7 (.1) Lus10034319 [exp] 123 / 2e-34 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Lus10041452 [exp] 120 / 2e-33 AT1G25450 890 / 0.0 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) Lus10002533 [exp] 117 / 7e-32 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 116 / 1e-31 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 115 / 2e-31 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10039401 [exp] 113 / 7e-31 AT1G04220 644 / 0.0 3-ketoacyl-CoA synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015100 [exp] 142 / 1e-41 AT1G71160 486 / 6e-170 3-ketoacyl-CoA synthase 7 (.1) Potri.001G211400 [exp] 123 / 1e-34 AT1G71160 563 / 0.0 3-ketoacyl-CoA synthase 7 (.1) Potri.008G120300 [exp] 123 / 3e-34 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.010G125300 [exp] 120 / 3e-33 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.004G155600 [exp] 120 / 5e-33 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.009G116700 [exp] 118 / 2e-32 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.014G196200 [exp] 114 / 6e-31 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.005G217000 [exp] 113 / 8e-31 AT1G04220 501 / 1e-174 3-ketoacyl-CoA synthase 2 (.1) Potri.018G032200 [exp] 108 / 6e-29 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.002G178000 [exp] 106 / 6e-28 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein
Representative CDS sequence Show only first row Show all	>Lus10015195 pacid=23149492 polypeptide=Lus10015195 locus=Lus10015195.g ID=Lus10015195.BGIv1.0 annot-version=v1.0 ATGGGGTGCAGTGCGGGTTTGCTGTCTTTATCTCTGGGGAAAGAGATGCTAACAGTTCATCAGAATTGCACGGTTCTTATACTGAGCACGGAGGCCATCT CTCCTAGCATTTACGAAGGGAAGATCAAATCGATGCTGCTGTCGAACTGCATATTCCGGATGGGAGGCTCGGCGGTCTTGCTCTCAAATCGCGAGAGCGA CAGGGAGAGGGCCAAGTACGAACTCCAGCACGTGGTGACCACCAGCATAGCCTCGAAAGACATATCGTACAAGTGTGTGTTCCACGAGACGGACTCCGAG GGGTACACCGGTATGAACTTGTCGAGGTCGATCCTTGATTGA
AA sequence Show only first row Show all	>Lus10015195 pacid=23149492 polypeptide=Lus10015195 locus=Lus10015195.g ID=Lus10015195.BGIv1.0 annot-version=v1.0 MGCSAGLLSLSLGKEMLTVHQNCTVLILSTEAISPSIYEGKIKSMLLSNCIFRMGGSAVLLSNRESDRERAKYELQHVVTTSIASKDISYKCVFHETDSE GYTGMNLSRSILD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10015195 [exp]	0	1
					Lus10033430 [exp]	3.5	0.6383
					Lus10011908 [exp]	5.3	0.6740
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004029 [exp]	13.4	0.6368
AT3G04620		DAN1	D NUCLDUO1-ACTIVATEEIC ACID BI...		Lus10005531 [exp]	21.2	0.6145
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	22.6	0.6472
AT1G62660			Glycosyl hydrolases family 32 ...		Lus10030278 [exp]	31.8	0.5961
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10039138 [exp]	32.6	0.5999
AT1G58025			DNA-binding bromodomain-contai...		Lus10036580 [exp]	43.6	0.5716
					Lus10024825 [exp]	48.0	0.5750
					Lus10026438 [exp]	65.3	0.5859

Compare expression of checked genes

Lus10015195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.