Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15920 207 / 3e-65 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 202 / 4e-63 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT5G13170 186 / 6e-56 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT3G48740 182 / 7e-55 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G23660 182 / 8e-55 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT5G62850 177 / 1e-53 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT5G50800 179 / 3e-53 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT4G10850 176 / 1e-52 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT4G25010 171 / 2e-50 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT2G39060 168 / 1e-49 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034880 [exp] 197 / 7e-61 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10033416 [exp] 191 / 2e-58 AT5G62850 283 / 8e-97 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002364 [exp] 184 / 7e-56 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10000310 [exp] 181 / 4e-54 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1) Lus10003143 [exp] 174 / 1e-51 AT5G13170 295 / 4e-100 senescence-associated gene 29 (.1) Lus10015754 [exp] 174 / 2e-51 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10023249 [exp] 172 / 4e-51 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10008861 [exp] 171 / 9e-51 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1) Lus10042131 [exp] 170 / 3e-50 AT5G62850 265 / 2e-89 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013800 [exp] 291 / 6e-97 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1) Potri.013G013900 [exp] 269 / 4e-88 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1) Potri.013G014500 [exp] 205 / 3e-64 AT4G15920 241 / 2e-80 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 197 / 3e-61 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1) Potri.008G220600 [exp] 185 / 1e-56 AT4G15920 261 / 3e-88 Nodulin MtN3 family protein (.1) Potri.013G014400 [exp] 181 / 5e-55 AT4G15920 209 / 5e-68 Nodulin MtN3 family protein (.1) Potri.019G030500 [exp] 181 / 1e-54 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 178 / 1e-53 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.015G101700 [exp] 178 / 4e-53 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.003G166800 [exp] 166 / 2e-48 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10015196 pacid=23149548 polypeptide=Lus10015196 locus=Lus10015196.g ID=Lus10015196.BGIv1.0 annot-version=v1.0 ATGACTGCCAATTCCACAAGCTTCATCGTTGGCCTCATTGGGAACATCATTGCAATCATGGTTTTTACCTCACCAATCAAGACATTTGTGGGGATAGTGA AGAAAAAATCGACGGAGGATTATAAAGGCGTCCCGTACATAATAACGCTGTTAAGCACCAGTCTATGGACGTTCTACGGACTCCTTAAGACGGACGGATT GCTCATCGTCACCGTTAATGGCGCCGGCGTCATGTTTCAGTCCATCTACGTCCTCCTTTTCCTGACTTTTGCTCCCAGGGACAAAAGGATCCATACGGCA ATACTAGTGGGGATCATGAACATAGGATTTCTCGGAGGAGTAATTGCCATAACTTTATTGGGACTCTCGAAAAGCCACGAGAAGATCACCTTTGTAGGCA CTCTTTGTATGGGACTGACCATCGGGATGTACGCCGCTCCCCTCTCTGCCATGAGAATGGTGATTCAGACAAAAAGCGTTATGTACATGCCGTTTCTGTT GTCGTTCTGCCTTTTCCTCAACGGAGGCGTGTGGTCTATTTACGCCGTGCTAGTGAACGACATTTACATCATTGTTCCAAATGCAATTGGATTGGTGTTG GGGACAGCCCAATTGGTCATATACATGGTGTACAATGACAGGTCAGAGGAATCCACGTCAGACGATGAGGTGGACAAAGAGACGGGCCTCGTTGACTTTG ACTATCACGTGGAGAAAGAAAAATCTAAAATCCAAAAACACATCATCGAGGAATCAAATTATAACCTACACAAAGTAGACGAAAAGAGAAAAGACGTTGA AAATCACAAAGACGAGGAAGAAGAAGAAGAAGACGGCTCGAAGGGCCCTAACCTAAGCAAACTGGTTAGCCTTCCCAAGCCGTCGGTCAATAGGATGCAT AGTGTTAAGAAGATGATGAGGACTATATCCAACATTAGTCCCTACGACCTAGACTCCAATTGGGCCACGACCACCGGTGCGAAAGTAGGCGGTGGGGACA CACCGAGCCATCAACAAAAGATTAAGTGCGACACGTCGAAACCTACTTTCAATAGGTTACAGAGTGTGAAGAAGATCATGAGAACACTATCTTCTATTAA AGCTTGCGATCTCGACTCGAACTGGGCCTCTACCACCCCTCGTGGCAAACGTAGTGATCAGTGTCGTTGA
AA sequence Show only first row Show all	>Lus10015196 pacid=23149548 polypeptide=Lus10015196 locus=Lus10015196.g ID=Lus10015196.BGIv1.0 annot-version=v1.0 MTANSTSFIVGLIGNIIAIMVFTSPIKTFVGIVKKKSTEDYKGVPYIITLLSTSLWTFYGLLKTDGLLIVTVNGAGVMFQSIYVLLFLTFAPRDKRIHTA ILVGIMNIGFLGGVIAITLLGLSKSHEKITFVGTLCMGLTIGMYAAPLSAMRMVIQTKSVMYMPFLLSFCLFLNGGVWSIYAVLVNDIYIIVPNAIGLVL GTAQLVIYMVYNDRSEESTSDDEVDKETGLVDFDYHVEKEKSKIQKHIIEESNYNLHKVDEKRKDVENHKDEEEEEEDGSKGPNLSKLVSLPKPSVNRMH SVKKMMRTISNISPYDLDSNWATTTGAKVGGGDTPSHQQKIKCDTSKPTFNRLQSVKKIMRTLSSIKACDLDSNWASTTPRGKRSDQCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10015196 [exp]	0	1
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037664 [exp]	1.4	0.9568
AT1G71320			F-box family protein (.1)		Lus10038210 [exp]	6.0	0.9475
AT1G13610			alpha/beta-Hydrolases superfam...		Lus10019205 [exp]	9.4	0.8794
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10030205 [exp]	11.6	0.8884
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10029443 [exp]	12.0	0.8938
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10002687 [exp]	15.1	0.8974
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10035890 [exp]	22.3	0.8294
AT1G07795			unknown protein		Lus10005894 [exp]	22.8	0.8596
AT1G30290			Tetratricopeptide repeat (TPR)...		Lus10005303 [exp]	24.2	0.8085
AT1G52190			Major facilitator superfamily ...		Lus10038614 [exp]	26.5	0.8786

Compare expression of checked genes

Lus10015196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.