Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09150 288 / 1e-99 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031485 [exp] 329 / 3e-113 AT3G05590 333 / 9e-116 ribosomal protein L18 (.1) Lus10041458 [exp] 47 / 6e-06 AT1G71350 810 / 0.0 eukaryotic translation initiation factor SUI1 family protein (.1) Lus10034314 [exp] 41 / 0.0007 AT1G71350 809 / 0.0 eukaryotic translation initiation factor SUI1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013700 [exp] 303 / 1e-105 AT1G09150 307 / 2e-108 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1) Potri.005G023600 [exp] 301 / 7e-105 AT1G09150 305 / 1e-107 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF01472 [flax] [poplar] PUA PUA domain
Representative CDS sequence Show only first row Show all	>Lus10015197 pacid=23149535 polypeptide=Lus10015197 locus=Lus10015197.g ID=Lus10015197.BGIv1.0 annot-version=v1.0 ATGCCAATATCAGGTTGGATATCATGGAATAAATCGCAATTCTCAAAGTTTTCCGGCGAGGAGGTGTCGGCTCAGAACCAGGTGAAGGCGTCGGTTCAGA GGAGAATCCGGCAGAGTATTGCGGAAGAGTACCCGGGTTTGGAACCAGTGATGGAGGATTTGCTGCCGAAGAAGTCTCCTTTAGTTGTTGTGAAGTGTCA AAATCATCTGAATTTGGTAGTGGTGAACAATGTTCCGTTGTTCTTCAACATCAGAGATGGTCCTTACATGCCTACTTTGAGACTTCTTCATCAATATCCT GATATCATGCAAAAGATACAGGTTGACAGAGGCGCAATTAGATTCGTTCTTTCTGGCGCTAACATAATGTGCCCTGGCCTTACGTCTCCTGGCGGGGTCT TGGATGATGAAGTAGAAGCAGAAACACCTGTGGCTATAATGGCTGAAGGAAAGAAGCATGCCCTCGCCATCGGCTACACCAAAATGTCAGCAAAAGACAT GCGATCGATCAACAAGGGTATCGGTGTGGACAACCTCCATTACCTCAACGATGGTCTTTGGAAGGTAACCCCAACTTTCTTTATCATTTCCCTCTACTGC ATTCTCTTCTTCATACCGCCTTCTCGAATGATTAACGAATTCGGAAACTTCGCTGCAGATGGAGCGTCTCGATTGAGGAGGTTACTGATGACAGCACACC GCAGTTCCACTTTTGTATCTCTGCTTATCATCTATCTTCATACTAGCTCATAA
AA sequence Show only first row Show all	>Lus10015197 pacid=23149535 polypeptide=Lus10015197 locus=Lus10015197.g ID=Lus10015197.BGIv1.0 annot-version=v1.0 MPISGWISWNKSQFSKFSGEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVMEDLLPKKSPLVVVKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYP DIMQKIQVDRGAIRFVLSGANIMCPGLTSPGGVLDDEVEAETPVAIMAEGKKHALAIGYTKMSAKDMRSINKGIGVDNLHYLNDGLWKVTPTFFIISLYC ILFFIPPSRMINEFGNFAADGASRLRRLLMTAHRSSTFVSLLIIYLHTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09150			pseudouridine synthase and arc...		Lus10015197 [exp]	0	1
AT1G43860			sequence-specific DNA binding ...		Lus10029749 [exp]	1.7	0.9228
AT5G49540			Rab5-interacting family protei...		Lus10029365 [exp]	2.2	0.9025
AT4G17510		UCH3	ubiquitin C-terminal hydrolase...		Lus10026940 [exp]	2.4	0.9110
AT2G16860			GCIP-interacting family protei...		Lus10027464 [exp]	4.2	0.9123
AT5G18540			unknown protein		Lus10002878 [exp]	5.7	0.8929
AT5G30490			unknown protein		Lus10037824 [exp]	6.5	0.8986
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	6.6	0.9035
AT5G02930			F-box/RNI-like superfamily pro...		Lus10029589 [exp]	11.6	0.8471
AT3G17300		EMB2786	unknown protein		Lus10037835 [exp]	11.7	0.8999
AT5G03430			phosphoadenosine phosphosulfat...		Lus10026539 [exp]	11.8	0.8683

Compare expression of checked genes

Lus10015197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.