Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05590 310 / 2e-109 RPL18 ribosomal protein L18 (.1) AT5G27850 309 / 7e-109 Ribosomal protein L18e/L15 superfamily protein (.1) AT2G47570 226 / 8e-77 Ribosomal protein L18e/L15 superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029879 [exp] 339 / 1e-120 AT5G27850 330 / 3e-117 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10041264 [exp] 337 / 5e-120 AT5G27850 330 / 4e-117 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10031485 [exp] 342 / 4e-119 AT3G05590 333 / 9e-116 ribosomal protein L18 (.1) Lus10020659 [exp] 333 / 6e-114 AT3G05580 562 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10021971 [exp] 331 / 8e-112 AT5G42390 629 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202800 [exp] 328 / 2e-116 AT3G05590 340 / 3e-121 ribosomal protein L18 (.1) Potri.014G127300 [exp] 327 / 5e-116 AT3G05590 334 / 8e-119 ribosomal protein L18 (.1) Potri.005G023500 [exp] 322 / 3e-114 AT3G05590 320 / 2e-113 ribosomal protein L18 (.1) Potri.013G013600 [exp] 320 / 4e-113 AT3G05590 337 / 8e-120 ribosomal protein L18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0588 [flax] [poplar] Ribos_L15p_L18e PF00828 [flax] [poplar] Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Representative CDS sequence Show only first row Show all	>Lus10015198 pacid=23149486 polypeptide=Lus10015198 locus=Lus10015198.g ID=Lus10015198.BGIv1.0 annot-version=v1.0 ATGGGTATCGATTTGAAGGCAGGAGGTAAGAGGAAGAAGACCAAGAGGACGGCTCCCAAGTCCAATGATATCTACCTCAAGCTCCTCGTCAAGCTGTACC GATTTCTGGTGAGGAGGACTGGAAGCAGCTTCAACGGTGTGATTTTGAAGAGGCTGTTCATGAGCAAGATCAACAAGCCCCCGCTATCACTCTCCAGGCT CATCCGATTTATGGAGGGAAAGGATGGAAAGATTGCTGTGATTGTTGGAACAATCACCGATGATATTAGAGTTTATGATGTTCCGGCTATGAAGGTGACT GCTTTGAGGTTCACTGAGACTGCTAGAGCTAGAATTGAGAAGGCTGGTGGTGAGTGCTTGACATTTGACCAGCTCGCCTTGAGAGCACCTCTTGGCCAGA ACACGGTTCTCCTCAGGGGTCCTAAGAACGCTCGTGAGGCAGTGAAGCACTTTGGCCCAGCTCCTGGTGTGCCACACAGCCACACCAAGCCTTATGTCAG GTCGAAGGGAAGGAAGTTCGAAAAAGCTAGGGGAAGGAGGAACAGCAGAGGATTCAGGGTTTAA
AA sequence Show only first row Show all	>Lus10015198 pacid=23149486 polypeptide=Lus10015198 locus=Lus10015198.g ID=Lus10015198.BGIv1.0 annot-version=v1.0 MGIDLKAGGKRKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSSFNGVILKRLFMSKINKPPLSLSRLIRFMEGKDGKIAVIVGTITDDIRVYDVPAMKVT ALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10015198 [exp]	0	1
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Lus10030595 [exp]	1.0	0.9803
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	1.4	0.9800
AT5G35530			Ribosomal protein S3 family pr...		Lus10030502 [exp]	2.2	0.9776
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10000946 [exp]	2.8	0.9780
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	3.5	0.9787
AT1G09590			Translation protein SH3-like f...		Lus10017232 [exp]	4.1	0.9652
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10004743 [exp]	4.6	0.9740
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10033607 [exp]	4.9	0.9748
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002860 [exp]	6.9	0.9664
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005441 [exp]	7.2	0.9670

Compare expression of checked genes

Lus10015198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.