Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11060 201 / 6e-66 MTSSB mitochondrially targeted single-stranded DNA binding protein (.1) AT3G18580 102 / 5e-27 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031482 [exp] 258 / 9e-87 AT4G11060 277 / 4e-94 mitochondrially targeted single-stranded DNA binding protein (.1) Lus10038946 [exp] 95 / 4e-24 AT3G18580 243 / 7e-82 Nucleic acid-binding, OB-fold-like protein (.1) Lus10027237 [exp] 94 / 1e-23 AT3G18580 278 / 1e-95 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011800 [exp] 215 / 3e-71 AT4G11060 279 / 2e-96 mitochondrially targeted single-stranded DNA binding protein (.1) Potri.012G058800 [exp] 104 / 1e-27 AT3G18580 261 / 2e-88 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00436 [flax] [poplar] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Lus10015200 pacid=23149556 polypeptide=Lus10015200 locus=Lus10015200.g ID=Lus10015200.BGIv1.0 annot-version=v1.0 ATGACTTCATTGCTGACAAGCCTGAGTTGTAGCTCCAAGGTGTTGATCCCAGGAAAGGCTGGGGATTCCGTGGCGTGCACAAGGAAGCTGGCAGATTTAA TCCATGAGACTAATTTATCATCTATGATAGAAGAGGCAATAATCTGTGGGAAAGTGGGGCAGGCTCCGGTTCAGAAGATCTTGAGAAATGGTCGAAGTGT AACGATCTTTACAGTTGGAACTGGTGGGTTAATTGACCAACCACTCGTGAGTGCTAGAGACCTTCCGAAACCAGCTCAGTGGCATCGAATCGCTGTGCAT AATGAATCTCTTGGTGCTTATGCAGTTCAAAAAGTTGCCAAGAACTATGCAGTCTATGTTGAAGGGGACATTGAAACTAGGGTCTACAATGATATCATCA GTGGGGAAGTGAAAAACATACCAGAGATATGCATTCGTCGCGACGGAAGGATTCGACTCGTACAGGGTGGAGAAACCGCCCAAAACTTCTCGTTCGAGGA TCTGAGTAAGTCTTCGCTTAGTGCAACTTGTTTTAACATGTTCAATCTCCGGTTTCGACATGTTTGGCTTACCTTATTTTCTTTTAGTCTCCATAGTTTG TTAACAGAAGCCTTTCTATGA
AA sequence Show only first row Show all	>Lus10015200 pacid=23149556 polypeptide=Lus10015200 locus=Lus10015200.g ID=Lus10015200.BGIv1.0 annot-version=v1.0 MTSLLTSLSCSSKVLIPGKAGDSVACTRKLADLIHETNLSSMIEEAIICGKVGQAPVQKILRNGRSVTIFTVGTGGLIDQPLVSARDLPKPAQWHRIAVH NESLGAYAVQKVAKNYAVYVEGDIETRVYNDIISGEVKNIPEICIRRDGRIRLVQGGETAQNFSFEDLSKSSLSATCFNMFNLRFRHVWLTLFSFSLHSL LTEAFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11060		MTSSB	mitochondrially targeted singl...		Lus10015200 [exp]	0	1
AT2G29200		APUM1	pumilio 1 (.1)		Lus10001567 [exp]	2.2	0.8033
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004533 [exp]	20.6	0.7608
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	25.1	0.7599
AT1G04210			Leucine-rich repeat protein ki...		Lus10021898 [exp]	33.4	0.7318
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10016387 [exp]	49.2	0.6951
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011742 [exp]	55.7	0.6932
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020139 [exp]	65.3	0.6646
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10038946 [exp]	66.9	0.6062
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10011867 [exp]	80.0	0.6797
AT4G33460		ABCI10, ATNAP13...	embryo defective 2751, ATP-bin...		Lus10002094 [exp]	100.0	0.6012

Compare expression of checked genes

Lus10015200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.