Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11420 771 / 0 ATTIF3A1, ATEIF3A-1, TIF3A1, EIF3A eukaryotic translation initiation factor 3A (.1) AT4G23330 60 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015204 [exp] 1091 / 0 AT4G11420 1284 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10031477 [exp] 1084 / 0 AT4G11420 1290 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10031481 [exp] 625 / 0 AT4G11420 691 / 0.0 eukaryotic translation initiation factor 3A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021400 [exp] 853 / 0 AT4G11420 1083 / 0.0 eukaryotic translation initiation factor 3A (.1) Potri.013G011900 [exp] 812 / 0 AT4G11420 1028 / 0.0 eukaryotic translation initiation factor 3A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10015201 pacid=23149574 polypeptide=Lus10015201 locus=Lus10015201.g ID=Lus10015201.BGIv1.0 annot-version=v1.0 ATGACTGCTCATCGAGCCTTCCAATTCTGCAAGCAGTACAAGCGAACAACCGAGTTCAGGAGACTGTGTGAGATCATCAGAAATCATTTAGCAAACCTTA ACAAGTACAGAGATCAAAGGGACCGACCTGATCTGTCTGCTCCTGAAAGCTTGCAACTGTATCTTGATACCAGATTTGAGCAGCTCAAGGTGGCTACTGA GCTTGAGCTCTGGCAGGAAGCTTTCCGTTCTGTTGAGGATATTCACGGATTGATGTGCCTGGTGAAGAAGACCCCCAAATCATCCTTGATGGTTGTGTAC TATGCGAAGTTGACTGAAGTTTTTTGGATATCTTCAAGCCGTCTTTATCATGCTTATGCATGGTTCAAGCTTTTTAGCCTTCAAAAAAGCTTCAACAAGA ATCTCAGCCAGAAAGATTTGCAGCTGATAGCGTCTGCTGTTGTTTTGGCTGCTTTAGCCGTGGCTCCATATGACACCCGCCGTGCATCTCATGTGGAACT TGAAAATGAGAAGGAGCGTGACTGGAGCTTCAACAAGAACCTAAGTCAGAAAGATTTGCAACTGATAGCGTCTGCTGTTGTTTTGGCGGCTCTAGCCGTG ACTCCATATGACACCTACCGTGCGTCTCATGTGGAACTTGAAAACGAGAAGGAGCGTAACTTGAGAATGTCAAATCTCATCGGGTTCAACTTGGATCCCA AATCTGAGAGCAGAGAAGTCCTTTCAAGGGCGTCCCTCCTGTCCGAACTGGTGTCCAAAGGTGTGCTGAGTTGTGCTACTCAGGAAGTGAAAGACATCTA TCATCTTCTGGAACATGAGTTTCTCACTGTTGATCTTGGGGCAAAGGTACAACCTTTACTCACCAAAATATCGAAAGTTGGTGGAAAGCTTGCCTCAGCT TCTGGTGTAGCAGAGGTTCAACTGTCCCAGTATGTCCCTGCCCTCGAAAAGCTTGCTACCGTCAGGCTACTTCGGCAGGTCTCTCAGGTGTATCAAACAA TGAAGATGGGGAAATTATCACAAATGATTCCTTTCTTCGATCTTTCCGTTGTTGAGAAAATCTCTGTTGATGCAGTCAAGCATAAGTTCATTGCCATGAA AGTTGACTATGTGAAGAAGGCTGTCATGTTCGGAGATGGGCTCCTCGAATCCGACGGATTGCAAGATCATTTAACTGCTTTTGCTGAATCCCTGAACAAA GCAAGGGCAATGATCTACCCACCTGCTAAGAGATCATCAAAACTTGGTGACATCTTGCCCATGCTTGAGGAGACAGTCGACAAGGAACACAAAAGACTTC TTGCTAGGAAGTCAATCATCGAGAAACGCAAAGAAGAACAAGAACGACAACTTCTTGAAATGGAACGAGAGCAAGAGTCCAAGAGATTGTCTGAACAGAA GAAAACCGAGGAGCAAGAACAGAAGAGGCTCGCAGCAGAGTACGAACGCCTGAAGAGTCAGAGGATCCTGCGCGAGATAGAGGAGCGTGAGCTTGAAGAA GCGCAGGCATATCTCGAGGAAGCTGAGAAGCGCAGTAAAAAGAAGGGTGGAAAGAAGCCTATCATAGAAGGAGAGAAAGTAACCAAGGAAACTCTGATGG AAAGGGCTAGGAACGAGCAGCTGAGGGAAAGGCAAGAAATGGAGAAGAAGCTTCAAAAGGCTGTTAAAACGATGGATCACCTGGAACGCGCTAAACGAGA AGAAGCTGCTCCTTTGATCGAAGCCGCCTTCCAGCAACGACTTGTGGAAGAGCAGGCCCTCCATGAACGTGAACAACAGCTTGAGGTTGAACTTAGCAGA CAGCATCACGAAGAAGACCTTAAGCAGAAGAATCGGCTAGCCCGAATGATCGAAAACAAGAATGTTTTCAAGGAGAGGGTGATCAGCCGTCGGCAAGAGG AGTTCGATCGAAGGAGAATCGAGAAGGAAGCGAGACTCAACCAGATTATGCAAGCTAGGAGGCAAGAAAGAGAGATTCAGAGGAAGAAAGTATTCTATGT TAGGGCTGAGATGGACAGGCTGGCTAAGCTTAAGGAAGAGGAGGAAGCTAGAAAGCGAGAAGAAGCGGAGAGACGGAAGAAGGAAGAATCGGATAGAAAG GCAAAGCTGGATGAAATCGCTGCGAAGCAGAGGCAGAGAGAGCAAGAACTGGAAGAGAAAGAAAGGTTGAGGAGAGAGGCTCTTTTGTCTGGAAGGACAA CGTCAACAGATGGACCTTCCAGGCCTACCGCCGATGCCCCTGCCGCAGCAGCTGCCGCACCGTCCTCTGGAGCTGCGAAATACGTGCCTAGGTTCCGTCG CAGTGGCGACAGTGCCCAGGCTCCTCCACCAGACACTGGCCGGAGCAGTGGAGCCAGGCCTGGTCCCGATTCCACCGATCGCTGGACCAGCGGTGGCGCT GTTAGGACTGCAGAGCCAGACCGATGGACAAGCGGCGGAGCAAGGCAGCAGCAGGGACCACCTCCTGCCGGTGGTGGCCGGCCTGCTGCTGACGATCGCA ACCCTCCGGGTGACAGGTGGCGTGGCAGTAGTGGCGGCGCAGGTAGTTGGGCTGCCTCGAGGCGCGAGCGTTGA
AA sequence Show only first row Show all	>Lus10015201 pacid=23149574 polypeptide=Lus10015201 locus=Lus10015201.g ID=Lus10015201.BGIv1.0 annot-version=v1.0 MTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCLVKKTPKSSLMVVY YAKLTEVFWISSSRLYHAYAWFKLFSLQKSFNKNLSQKDLQLIASAVVLAALAVAPYDTRRASHVELENEKERDWSFNKNLSQKDLQLIASAVVLAALAV TPYDTYRASHVELENEKERNLRMSNLIGFNLDPKSESREVLSRASLLSELVSKGVLSCATQEVKDIYHLLEHEFLTVDLGAKVQPLLTKISKVGGKLASA SGVAEVQLSQYVPALEKLATVRLLRQVSQVYQTMKMGKLSQMIPFFDLSVVEKISVDAVKHKFIAMKVDYVKKAVMFGDGLLESDGLQDHLTAFAESLNK ARAMIYPPAKRSSKLGDILPMLEETVDKEHKRLLARKSIIEKRKEEQERQLLEMEREQESKRLSEQKKTEEQEQKRLAAEYERLKSQRILREIEERELEE AQAYLEEAEKRSKKKGGKKPIIEGEKVTKETLMERARNEQLRERQEMEKKLQKAVKTMDHLERAKREEAAPLIEAAFQQRLVEEQALHEREQQLEVELSR QHHEEDLKQKNRLARMIENKNVFKERVISRRQEEFDRRRIEKEARLNQIMQARRQEREIQRKKVFYVRAEMDRLAKLKEEEEARKREEAERRKKEESDRK AKLDEIAAKQRQREQELEEKERLRREALLSGRTTSTDGPSRPTADAPAAAAAAPSSGAAKYVPRFRRSGDSAQAPPPDTGRSSGARPGPDSTDRWTSGGA VRTAEPDRWTSGGARQQQGPPPAGGGRPAADDRNPPGDRWRGSSGGAGSWAASRRER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015201 [exp]	0	1
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10020269 [exp]	2.6	0.8258
AT3G32940			RNA-binding KH domain-containi...		Lus10039188 [exp]	3.2	0.8161
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	4.9	0.8163
AT1G10840		TIF3H1	translation initiation factor ...		Lus10007054 [exp]	6.7	0.7874
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	7.3	0.8255
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10012172 [exp]	8.8	0.7791
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	11.5	0.8161
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	14.1	0.7914
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033487 [exp]	19.0	0.7765
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10000399 [exp]	19.8	0.7457

Compare expression of checked genes

Lus10015201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.