Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40650 317 / 2e-106 PRP38 family protein (.1) AT5G37370 49 / 5e-06 ATSRL1 PRP38 family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031361 [exp] 49 / 5e-06 AT5G37370 394 / 2e-136 PRP38 family protein (.1.2.3.4) Lus10010963 [exp] 49 / 5e-06 AT5G37370 446 / 1e-156 PRP38 family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012000 [exp] 327 / 3e-110 AT2G40650 346 / 7e-118 PRP38 family protein (.1) Potri.005G021600 [exp] 172 / 6e-51 AT2G40650 180 / 2e-54 PRP38 family protein (.1) Potri.017G144121 [exp] 49 / 4e-06 AT5G37370 408 / 7e-141 PRP38 family protein (.1.2.3.4) Potri.004G075700 [exp] 45 / 4e-05 AT5G37370 411 / 4e-142 PRP38 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03371 [flax] [poplar] PRP38 PRP38 family
Representative CDS sequence Show only first row Show all	>Lus10015203 pacid=23149527 polypeptide=Lus10015203 locus=Lus10015203.g ID=Lus10015203.BGIv1.0 annot-version=v1.0 ATGGCGAACCGAACGGACCCGGCGGCAAAGAGCATCAGGGGAACGAACCCTCAGAACCTTGTGGAGAAGATAGTCCGCACCAAGATTTACCAAAACACCT ACTGGAAGGAGCAGTGCTTCGGCTTGACCGCCGAGACGCTCGTCGACAAGGCGATGGAGCTCGACCACCTCGGCGGCACTCACGGAGGCAACCGCAGGCC TACTCCGTTCATCTGCCTCATCCTCAAGATGCTGCAGATCCAGCCAGATAAAGAAATCGTCGTCGAGTTCATCAAGAACGACGACTACAAGTACGTCCGC ATCCTCGGAGCGTTTTACCTCCGTCTCACGGGAACAGACGTCGATGTGTATAGGTATCTCGAGCCGCTGTATAATGATTACAGGAAGATTAGAGCGAAGC TGCCTGATGGAAAATACTCGTTGACCCATGTGGATGAGGTTATTGATGAGCTGTTGACGAAGGATTACTCATGGACTCTTGAATCGCTTGGTACATTGGA ACCAAGGAAGAGTGTGTTGGAGGATGACTTCGAGGAGGAAGAAGAGAAAGAGGAGAACGAGCAGCTCGATGAATTGGAGAATGGTGTGGGTGAGAAGGAT CACTACCATGGGAGAAGCCCAGCAAGGGAGAGGGATAGAGATAGAAGACGTGAGAGCCATCGACATAGAGATCGTGACTACGACAGAGACTATGACAGGG ACCGGGACTACGATAGAGATTACGAAAGGGATCGTGGACGTAGTGGTCGAGACAGAGACCGTGATAGAGACAGGGATCGGGAGAGCCACAGAGACCGGGA GAGAGACAGAGATCGTTACCGCCTGAGAGACGAGAAAGACTATGGCCGTGATAGGGAGCGTGAGCGGGAAGGGCGGGAACGAGAGAGGCGAGACAGAGGG GACCGGGGAAGGAGGAGGAGTCCTTCGAGGAGTCGGAGTAGAAGCAGAGATCGCAAGAGACGTCACATCAGCACCAGTCCCAAGCGGCCTCCTCCTAGTG ACGGAGCTACGACCGAAGAGACATCGAAGAAGAAGAAGAATGAGAAGAAGGAGAAGAAAGAGGATGGTACTGATCATCCGGACCCGGAGATTGCCGAAGC TAACAGGGTTCGTGCTTCTCTTGGTTTGAAACCACTGAAGTGA
AA sequence Show only first row Show all	>Lus10015203 pacid=23149527 polypeptide=Lus10015203 locus=Lus10015203.g ID=Lus10015203.BGIv1.0 annot-version=v1.0 MANRTDPAAKSIRGTNPQNLVEKIVRTKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTHGGNRRPTPFICLILKMLQIQPDKEIVVEFIKNDDYKYVR ILGAFYLRLTGTDVDVYRYLEPLYNDYRKIRAKLPDGKYSLTHVDEVIDELLTKDYSWTLESLGTLEPRKSVLEDDFEEEEEKEENEQLDELENGVGEKD HYHGRSPARERDRDRRRESHRHRDRDYDRDYDRDRDYDRDYERDRGRSGRDRDRDRDRDRESHRDRERDRDRYRLRDEKDYGRDREREREGRERERRDRG DRGRRRSPSRSRSRSRDRKRRHISTSPKRPPPSDGATTEETSKKKKNEKKEKKEDGTDHPDPEIAEANRVRASLGLKPLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10015203 [exp]	0	1
AT2G03190		ASK16	SKP1-like 16 (.1)		Lus10031747 [exp]	2.0	0.9390
AT2G25670			unknown protein		Lus10017738 [exp]	2.0	0.9537
AT5G53800			unknown protein		Lus10014800 [exp]	3.5	0.9375
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10029220 [exp]	3.7	0.9163
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10007273 [exp]	4.9	0.9159
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	5.7	0.9327
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10015058 [exp]	7.3	0.8949
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10042559 [exp]	8.4	0.9119
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	8.7	0.8942
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10038367 [exp]	9.9	0.9142

Compare expression of checked genes

Lus10015203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.