Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11420 1053 / 0 ATTIF3A1, ATEIF3A-1, TIF3A1, EIF3A eukaryotic translation initiation factor 3A (.1) AT4G23330 62 / 5e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031477 [exp] 1415 / 0 AT4G11420 1290 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10015201 [exp] 1036 / 0 AT4G11420 935 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10031481 [exp] 1035 / 0 AT4G11420 691 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10015202 [exp] 315 / 4e-101 AT4G11420 313 / 2e-101 eukaryotic translation initiation factor 3A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021400 [exp] 1147 / 0 AT4G11420 1083 / 0.0 eukaryotic translation initiation factor 3A (.1) Potri.013G011900 [exp] 1143 / 0 AT4G11420 1028 / 0.0 eukaryotic translation initiation factor 3A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10015204 pacid=23149539 polypeptide=Lus10015204 locus=Lus10015204.g ID=Lus10015204.BGIv1.0 annot-version=v1.0 ATGTCGAATTTCGCGAGGCCGGAGAACGCGCTAAAGCGCGCCGAAGAGCTGATAAATGTGGGACAAAAGCAGGAAGCTCTTCAAACGCTTCACAACGTCA TTACATCGAAAAGGTACAGGGCATGGCAGAAGACCCTGGAGAAGATAATGTTCAAGTATGTGGAGCTGTGTGTTGAAATGAGGAGGGGAAGATTTGCGAA AGACGGGCTGATCCAGTACAGGATTGTTTGCCAGCAAGTGAATGTGGCTTCCTTGGAGGAAGTGATCAAGTACTTCATTCAGCTCTCCACCGAGAAGGCT GAACAAGCTCGTACTCAGGCGCAAGCGCTGGAGGATGCTCTGGATGTTGATGATCTGGAAGCGGACAAGAGGCCGGAAGATCTGATGCTCAGTTATGTTA GTGGGGAGAAAGGGAAGGAAAGGTCTGACCGCGAGCTTGTCACTCCTTGGTTCAAGTTTCTTTGGGAGACTTACAGAACTGTGCTAGAGATTCTGAGGAA CAACTCCAAGTTGGAAGCCTTATATGCGATGACTGCTCATCGAGCCTTCCAATTCTGCAAGCAATACAAGCGAACAACTGAGTTCAGGAGACTTTGTGAG ATCATCAGAAATCATTTGGCAAACCTTAACAAGTACAGAGATCAAAGGGACCGACCTGATCTGTCTGCTCCTGAAAGCTTGCAACTGTATCTTGATACCA GATTTGAGCAGCTCAAGGTGGCTACTGAGCTTGAGCTCTGGCAGGAAGCTTTCCGTTCTGTTGAGGATATTCACGGATTGATGTGCCTGGTGAAGAAGAC CCCCAAATCATCCTTGATGGTTGTGTACTATGCGAAGTTGACTGAAGTTTTTTGGATATCTTCAAGCCGTCTTTATCATGCTTATGCATGGTTCAAGCTT TTTAGCCTTCAAAAAAGCTTCAACAAGAATCTCAGCCAGAAAGATTTGCAGCTGATAGCGTCTGCTGTTGTTTTGGCTGCTTTAGCCGTGGCTCCATATG ACACCCGCCGTGCATCTCATGTGGAACTTGAAAATGAGAAGGAGCGTAACATGAGAATGTCAAACCTCATCGGGTTCAACTTGGATCCCAAATCCGAGAG CAGAGAAGTGCTTTCAAGGGCGTCCCTCCTGTCTGAACTGGCGTCCAAAGGTGTGCTTAGTTGTGCAATTCAGGAAGTGAAAGACATCTATCATCTTATG GAGCATGAGTTTCTGCCTGTTGATCTTGGGGCAAAGATACAACCTTTACTTGCCAAAATATCAAAAGTCGGTGGAAAGCTTGCATCAGCTTCTGGTGTGG CAGAGGTTCAACTATCCCAGTACATCCCTGCCCTCGAACAGCTTGCTACCCTCAGGCTGCTTCGGCAGGTCTCTCAGGTGTATCAGACAATGAAGATTGG AAAGTTATCCCAAATGATTCCATTCTTTGATTTCTCCGTTGTTGAGAAAATCTCAGTTGATGCTGTCAAGCATAAGTTCATTGCTATGAAAGTTGATTAT ATGAAGCATGCTGTGATGTTTGGAGATAGAATATTCGAATCGGATGGTTTGCAAGATCATTTGACTGCTTTTGCTGAATCTCTGAACAAAGCAAGGGCAA TGATCTACCCACCTGCTAAGAAATCATCAAAACTTGGTGACATCTTGCCAGGGCTAGGCGATACTGTTGACAAAGAACACAAAAGACTTCTCGCCAGGAA GTCAATCATAGAGAAGAGAAAAGAAGAACAGGAACGACAACTTCTTGAAATGGAACGGGAGCAAGAGTCCAAGAGATTGTCTGAGCAAAAAAGAACTGAG GAGCAAGAACAGAAGAGGCTTGCAGCAGAGTATGAGCGCCTGAAGAACCAGAGGATCCTGCGTGAGATAGAGGAGCGTGAACTCGAAGAAGCACAGGCAT TCCTCGAGGAAGCTGAGAAGCGCAGTAAAAAGAAGGGTGGAAAGAAGCCTATCATCGAAGGAGAGAAAGTGACTAAGGAAACTTTGATGGAAAGGGCTAG GAACGAGCAGTTGAGGGAAAGGCAAGAAATGGAGAAGAAGCTGCAAAGGGCCGTTAAAACAATGGACCATCTGGAGCGTGCCAAAAGAGAAGAAGCTGCT CCATTGATTGAAGCCGCCTTCCAGCAACGACTCATCGAAGAGCAGGCCCTCCATGAACGTGAACAACAGCTTGAGGTTGAACTTAGCAGGCAGCATCATG AGGGTGATCTCAAGGAGAAGAACCGCCTAGCTCGAATGATAAAAAACAAGAACATTTTCCAGGAGAGGGTGATCAGCCGTCGGCAAGAGGAGTTCGATCG AAGGAGAATCGAGAAGGAAGCGAGACTGAACCAGATAATGCAAGCTAGGAAGCAAGAAAGAGAGATTCAGAGGAAGAAAGTATTCTATGTTAGGGCTGAG ATGGACAGGCTGGCTAAGCTTAAGGAAGAAGAGGAAGCTAAAAAGCGGGAAGAGGCGGAGAAAAGAAAGAAGGAAGAATTGGAGAGAAAGGCGAAGCTGG ACGAGATCGCTGCGAAGCAGAGGCAGAGAGAGCAAGAACTGGAAGAGAAGGAGAGGCTGAGGAGGGAAGCTCTCTTGTTAGGTAGGACAACATCAACAGA TGGACCTTCCAGGCCTACCTCCGATGCCCCCGCTGCCGCTGCTGCTCCTGCAGCGGCAGCAGCAGCTGTTGCACCGTCTTCCGGAGCAGGGAAATATGTC CCTAGGTTCCGTCGCAGTGGTGACAGTGTTGGACAGGCTCCTCCACCAGACACTGGTCGGAGCGGCGGCGTGGGTGGAGCCAGGCCTGGTCCTGAATCAG CTGATCGCTGGACCAGCGGTGGCGCTGCTAGGTCTGCAGAGCCAGACAGATGGACAAGGGGCGGCGCTAGGCAGCCTCCACCTCCTGCCAGTGGCGGGTC TCCTGCTGCCGAAGAGCGCAACCCTCCCGGTGACAGGTGGCGCGGCAGCAGTGGCGGAGCTGGTAGTTGGTCTGCTGCTAGGCGCGAGCGTTGA
AA sequence Show only first row Show all	>Lus10015204 pacid=23149539 polypeptide=Lus10015204 locus=Lus10015204.g ID=Lus10015204.BGIv1.0 annot-version=v1.0 MSNFARPENALKRAEELINVGQKQEALQTLHNVITSKRYRAWQKTLEKIMFKYVELCVEMRRGRFAKDGLIQYRIVCQQVNVASLEEVIKYFIQLSTEKA EQARTQAQALEDALDVDDLEADKRPEDLMLSYVSGEKGKERSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCE IIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCLVKKTPKSSLMVVYYAKLTEVFWISSSRLYHAYAWFKL FSLQKSFNKNLSQKDLQLIASAVVLAALAVAPYDTRRASHVELENEKERNMRMSNLIGFNLDPKSESREVLSRASLLSELASKGVLSCAIQEVKDIYHLM EHEFLPVDLGAKIQPLLAKISKVGGKLASASGVAEVQLSQYIPALEQLATLRLLRQVSQVYQTMKIGKLSQMIPFFDFSVVEKISVDAVKHKFIAMKVDY MKHAVMFGDRIFESDGLQDHLTAFAESLNKARAMIYPPAKKSSKLGDILPGLGDTVDKEHKRLLARKSIIEKRKEEQERQLLEMEREQESKRLSEQKRTE EQEQKRLAAEYERLKNQRILREIEERELEEAQAFLEEAEKRSKKKGGKKPIIEGEKVTKETLMERARNEQLRERQEMEKKLQRAVKTMDHLERAKREEAA PLIEAAFQQRLIEEQALHEREQQLEVELSRQHHEGDLKEKNRLARMIKNKNIFQERVISRRQEEFDRRRIEKEARLNQIMQARKQEREIQRKKVFYVRAE MDRLAKLKEEEEAKKREEAEKRKKEELERKAKLDEIAAKQRQREQELEEKERLRREALLLGRTTSTDGPSRPTSDAPAAAAAPAAAAAAVAPSSGAGKYV PRFRRSGDSVGQAPPPDTGRSGGVGGARPGPESADRWTSGGAARSAEPDRWTRGGARQPPPPASGGSPAAEERNPPGDRWRGSSGGAGSWSAARRER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	0	1
AT5G41190			unknown protein		Lus10001487 [exp]	1.4	0.9620
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10002835 [exp]	2.4	0.9547
AT3G02760			Class II aaRS and biotin synth...		Lus10041073 [exp]	2.8	0.9565
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10027886 [exp]	3.5	0.9538
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031481 [exp]	4.6	0.9521
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	4.9	0.9339
AT1G79150			binding (.1)		Lus10034234 [exp]	5.3	0.9382
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	5.5	0.9528
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10043154 [exp]	6.2	0.9382
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10010782 [exp]	6.7	0.9381

Compare expression of checked genes

Lus10015204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.