Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65750 1890 / 0 2-oxoglutarate dehydrogenase, E1 component (.1) AT3G55410 1887 / 0 2-oxoglutarate dehydrogenase, E1 component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029462 [exp] 1926 / 0 AT5G65750 1755 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10029463 [exp] 1645 / 0 AT5G65750 1641 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10005962 [exp] 1549 / 0 AT5G65750 1404 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10031476 [exp] 961 / 0 AT5G65750 856 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10005961 [exp] 525 / 2e-180 AT3G55410 498 / 9e-171 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10002678 [exp] 53 / 9e-07 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209000 [exp] 1968 / 0 AT5G65750 1908 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Potri.008G051600 [exp] 1962 / 0 AT3G55410 1907 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Potri.002G179500 [exp] 48 / 3e-05 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain
Representative CDS sequence Show only first row Show all	>Lus10015205 pacid=23149500 polypeptide=Lus10015205 locus=Lus10015205.g ID=Lus10015205.BGIv1.0 annot-version=v1.0 ATGGCGTGGTTTAGAGCTGTTTCTAGCATAGCAAAGCTTGCCATTAGAAGGAGTTTGTCTCAGGGTGGGTCCAGAACGCGAGTGTTACCTACTGCTACTG CTCAAAGTCGGTATTTTCATACCACTGTATTTAGGCCAAAGGCACAGTCAGCACCTGTCCCGAGGGCTGTTCCTCTTTCTAAGCTAACTGATAGCTTCTT AGATGGAACTAGCAGTGTCTACTTAGAGGAGCTTCAACGTGCATGGGAAGCGGACCCGAATAGCGTGGATGAGTCATGGGACAACTTCTTCAGGAACTTT GTGGGTCAGGCTGTTACATCTCCTGGCATTTCAGGTCAAACAATTCAGGAGAGCATGCGGTTGTTGCTTCTGGTTAGGGCATACCAGGTTAATGGCCACA TGAAAGCCAAGCTAGACCCTCTGGCATTGGAAGAAAGAGAGGTCCCTGATGATCTGAACCCTTCTCTTTATGGCTTCTCAGAAGCGGATCTTGATAGGGA GTTCTTTTTAGGAGTTTGGAAGATGTCTGGTTTTTTATCTGAGAACCGCCCTGTACAGACCCTCAGGTCCATATTGACCAGGCTTGAGCAAGCTTATTGT GGGAGTATTGGATTTGAATACATGCACATTGCTGATAGGGAGAAATGCAATTGGTTAAGGGACAAGATTGAAACGCCAACACCTATGCAATATAACCGTC AACGCAAAGAGGTCATTCTCGATAGGCTGATATGGAGTACACAGTTTGAGAACTTCTTGGCCACTAAATGGACGACAGCCAAGAGATTTGGACTTGAAGG TGGAGAGACATTGATCCCCGGCATGAAAGAGATGTTTGACCGGTCTGCAGATCTCGGAGTGGAGAGCATAGTTATTGGAATGCCACATAGAGGTAGATTG AATGTACTGGGAAATGTCGTGAGAAAGCCTCTGCGCCAAATATTTAGTGAGTTCAGTGGTGGAACGAAGCCAGTAGATGAGGTTGGGCTCTACACAGGTA CTGGTGATGTCAAGTATCACTTGGGAACCTCTTATGATCGTCCAACCAGAGGTGGAAAGAGAATACATTTGTCTTTGGTTGCTAATCCTAGTCACTTGGA AGCTGTGGATCCTGTTGTTGTTGGAAAGACTAGAGCTAAGCAGTATTTTTCAAATGATGCGGACAGGACAAAGAATATGGGAATATTGATTCATGGAGAT GGTAGTTTTGCTGGGCAGGGTGTGGTATATGAGACTCTGCATCTTAGTGCACTGCCAAATTACAGCACCGGTGGGACTATCCATATTGTGGTGAACAACC AAGTGGCTTTCACAACAGATCCTATGTCAGGCAGATCTTCACAGTATTGTACTGATGTTGCCAAAGCCTTGAATGCTCCAATCCTCCATGTAAATGGAGA CGATGTAGAGGCTGTTGTTCATGCTTGTGAACTTGCTGCTGAATGGCGTCAGACTTTCCACTCTGATGTTGTTGTAGATCTAGTTTGCTATCGCCGTTTT GGCCATAATGAGATTGATGAGCCATCTTTCACGCAGCCCAAAATGTATCAGGTCATTCGGAGTCATCCCTCTGCCCTTGAGATTTATAAGAACAAACTTG TAGAATCTGGGCAGGTCAATCAAGAGGATATTAGCAAGATAACTGACAAGGTCAGCACAATCCTGAATGAAGAGTTTTTGGCCAGTAAAGATTATGTTCC TAAAAGGAGAGACTGGCTTGCTTCTCATTGGACTGGGTTCAAGTCACCTGAGCAGATTTCACGTATTAGAAATACCGGGGTCAAACCTGAAATCTTGAAG AACGTCGGTAAAGCAATCACTGCTCTTCCGGAGACTTTTAAGCCTCACAGAGCTGTAAAGAAGGTATACGAGCAACGTGCCCAAATGATAGAAACAGGAG AAGGCATTGACTGGGCTGTTGCAGAGGCACTTGCTTTTGCTACATTACTGGTTGAGGGCAACCATGTTCGATTGAGTGGTCAGGATGTTGAGAGAGGTAC ATTTAGTCATCGTCATTCCGTGCTTCATGATCAAGAAACTGGCGACAAGTATTGCCCTCTCGACCATGTTGTTATGAACCAGGACGAGGAGATGTTCACA GTTAGTAACAGCTCTCTTTCCGAATTTGGTGTTCTGGGATTCGAGTTGGGTTATTCAATGGAAAGCCCGAACTCACTGGTTCTCTGGGAAGCTCAATTTG GTGATTTTTCCAACGGGGCTCAAGTCATATTTGATCAGTTCTTGAGCAGCGGTGAGTCAAAATGGCTTCGTCAAACTGGCCTTGTTGTGCTTCTTCCTCA TGGATACGATGGCCAGGGTCCTGAACACTCAAGTGCTCGGTTAGAGCGCTTTCTACAGATGAGTGACGACAATCCTTATGTGATTCCTGAGATGGACTCG ACGATGCGTAAACAAATTCAGGAATGCAATTGGCAGGTTGTGAATGTAACGACACCTGCAAATTACTTCCATGTTCTGAGGAGACAGATACACAGAGAGT TCCGTAAGCCTCTTATAGTGATGGCTCCGAAAAATCTGCTCCGTCACAAGGAGTGCAAATCAAATCTCTCAGAGTTTGACGATGTCCAAGGCCACCCTGG ATTTGACAAGCAGGGTACGAGATTCAAGCGTCTGATAAAAGATCAGAATGAACACTCTGATCTTGAGGAGGGCATCAGACGCCTCGTTCTCTGCTCCGGA AAGGTGTATTATGAGCTTGACGAGGAGCGGAAGAAGAAAGATGCAAAGGATGTTGCTATCTGTAGGGTGGAACAACTGTGTCCTTTCCCGTATAATCTTG TCCAGCGGGAGCTCAAGCGGTATCCAAATGCGGAAATTGTGTGGTGCCAGGAGGAGCCGATGAACATGGGAGCATACAACTACGTAGCACCTCGGCTATG CACAGCGATGAAGTCACTAAGCAGAGGTGGGTTCGACGATATCAAGTACGTGGGGCGTGCTCCCTCGGCCGCAACAGCCACCGGGTTCTACCAAGTCCAC GGCAGGGAACAGTCGGAGCTCGTGCACAAGGCTATCCAGCCCGAACCGATCCAGTCTCCCGCCGAAACTGTTTGA
AA sequence Show only first row Show all	>Lus10015205 pacid=23149500 polypeptide=Lus10015205 locus=Lus10015205.g ID=Lus10015205.BGIv1.0 annot-version=v1.0 MAWFRAVSSIAKLAIRRSLSQGGSRTRVLPTATAQSRYFHTTVFRPKAQSAPVPRAVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNF VGQAVTSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLALEEREVPDDLNPSLYGFSEADLDREFFLGVWKMSGFLSENRPVQTLRSILTRLEQAYC GSIGFEYMHIADREKCNWLRDKIETPTPMQYNRQRKEVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRSADLGVESIVIGMPHRGRL NVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYFSNDADRTKNMGILIHGD GSFAGQGVVYETLHLSALPNYSTGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALNAPILHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRF GHNEIDEPSFTQPKMYQVIRSHPSALEIYKNKLVESGQVNQEDISKITDKVSTILNEEFLASKDYVPKRRDWLASHWTGFKSPEQISRIRNTGVKPEILK NVGKAITALPETFKPHRAVKKVYEQRAQMIETGEGIDWAVAEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGDKYCPLDHVVMNQDEEMFT VSNSSLSEFGVLGFELGYSMESPNSLVLWEAQFGDFSNGAQVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDS TMRKQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMAPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLVLCSG KVYYELDEERKKKDAKDVAICRVEQLCPFPYNLVQRELKRYPNAEIVWCQEEPMNMGAYNYVAPRLCTAMKSLSRGGFDDIKYVGRAPSAATATGFYQVH GREQSELVHKAIQPEPIQSPAETV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10015205 [exp]	0	1
AT3G16480		MPPALPHA	mitochondrial processing pepti...		Lus10012926 [exp]	2.2	0.9476
AT1G17160			pfkB-like carbohydrate kinase ...		Lus10042467 [exp]	2.8	0.9388
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	3.9	0.9537
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	6.0	0.9528
AT2G42520			P-loop containing nucleoside t...		Lus10029337 [exp]	6.2	0.9314
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Lus10037531 [exp]	6.2	0.9098
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10032520 [exp]	6.3	0.9477
AT5G08680			ATP synthase alpha/beta family...		Lus10034632 [exp]	7.1	0.9497
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10031492 [exp]	7.5	0.9306
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10021643 [exp]	8.4	0.8925

Compare expression of checked genes

Lus10015205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.