Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27930 452 / 2e-159 Protein phosphatase 2C family protein (.1.2) AT3G05640 442 / 9e-156 Protein phosphatase 2C family protein (.1.2) AT3G16800 379 / 5e-131 Protein phosphatase 2C family protein (.1.2.3) AT1G79630 292 / 5e-95 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 290 / 7e-95 Protein phosphatase 2C family protein (.1) AT4G03415 289 / 4e-94 Protein phosphatase 2C family protein (.1.2) AT1G16220 288 / 2e-93 Protein phosphatase 2C family protein (.1) AT1G03590 283 / 7e-92 Protein phosphatase 2C family protein (.1) AT3G02750 280 / 2e-90 Protein phosphatase 2C family protein (.1.2.3) AT5G01700 269 / 3e-87 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031475 [exp] 665 / 0 AT5G27930 456 / 3e-161 Protein phosphatase 2C family protein (.1.2) Lus10029874 [exp] 531 / 0 AT5G27930 514 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10016831 [exp] 405 / 9e-141 AT3G05640 459 / 2e-162 Protein phosphatase 2C family protein (.1.2) Lus10037709 [exp] 402 / 3e-139 AT3G05640 462 / 2e-163 Protein phosphatase 2C family protein (.1.2) Lus10022588 [exp] 300 / 6e-99 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10020671 [exp] 288 / 3e-97 AT3G05640 283 / 8e-96 Protein phosphatase 2C family protein (.1.2) Lus10021486 [exp] 291 / 2e-95 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10000402 [exp] 291 / 2e-94 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 290 / 8e-94 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012200 [exp] 478 / 8e-170 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 475 / 1e-168 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G006200 [exp] 431 / 3e-151 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2) Potri.010G006100 [exp] 426 / 5e-149 AT3G05640 451 / 2e-159 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 315 / 5e-104 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 302 / 4e-99 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.004G066200 [exp] 301 / 2e-98 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G473300 [exp] 300 / 4e-98 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.016G127900 [exp] 294 / 7e-96 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.019G103100 [exp] 293 / 8e-96 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10015206 pacid=23149495 polypeptide=Lus10015206 locus=Lus10015206.g ID=Lus10015206.BGIv1.0 annot-version=v1.0 ATGGGGCATCTATCAGCCATGTTGAAGCTGGCAAGGTCACTCTCACTGAAGAAAGACAAGAGCTTTCGTGGAGATGGTGATGGCAAAGAAACTGCCAAAT CAATGGAGAAAGAAGCAAAGAAGAATGAGTTGGTGTTCAAGTCCTCTGGTTCAAACAGCAACTTGGCCTCACTCTTCTCCAGAAGGGGAGAAAAGGGTGT CAATCAGGATTGCTTCATCCTTTGGGAGGAATTTGGATGCCAAGAGGACATGACCTTCTGTGGGATATTTGATGGGCATGGACCATGGGGACATTTTGTG GCCAAGAAAGTTAGGGAGACATTGCCATCATACCTCCTATGTAACTGGCAAGAAACCCTAGCTAACGAATCTTCAGTCGATCTTCCTAACGAAATCAACG AAGAAAAGCTTCACCGGGTCAATATTTGGAAGCGTTCGTACCTCAAGACCTTTGCTGAAGTTGACCATGAGCTCGAGCAGCAGCAAGACAATATTGATTC CTTCTACAGTGGCACAACTGCATTGACCCTAGTGAGACAGGCAAGTAATAACTGGAATCATCGGGGTACAACGGCAAATGTTGGTGACTCTAGGGCTATA TTGGCTACAACATCAGAGGATGGTGGCAGCTTGGTTCCTGTTCAACTCACTGTGGATTTCAAGCCAACTCTACCTGAGGAAGCAAAGAGGATCCTAGAAT GCAAAGGTAGAGTCTTCAGCTTAGAAGACGAGCCGGGAGTCGAAAGGGTCTGGCTACCACACGAGGAATCACCCGGCCTAGCAATGTCTCGAGCGTTTGG CGATTACTGCATCAAGGACTTTGGCCTCATCTCTGAACCAGAAGTGACTCTAAGGCACATCTCCGATAGAGACCGGTTTGTGATCTTGGCAACCGATGGA GTTTGGGATGTGATCACGAACCAAGAAGCTATAGAGATCGTGTTGTCAGTGAGTGACCAGTCAAAAGCTGCCGAGTGTTTGGTGAAGGCGGCGGCCAGTG GTTGGAGGAAGAGGAGGAAAGGGATCGCCATGGATGACATAAGTGTTGTTTGCTTGTTCTTGCATCATCATCTCCCAACTATATGTAAACAAGTTGTTAG TGTTGCTAGGAAGATGGTTTGA
AA sequence Show only first row Show all	>Lus10015206 pacid=23149495 polypeptide=Lus10015206 locus=Lus10015206.g ID=Lus10015206.BGIv1.0 annot-version=v1.0 MGHLSAMLKLARSLSLKKDKSFRGDGDGKETAKSMEKEAKKNELVFKSSGSNSNLASLFSRRGEKGVNQDCFILWEEFGCQEDMTFCGIFDGHGPWGHFV AKKVRETLPSYLLCNWQETLANESSVDLPNEINEEKLHRVNIWKRSYLKTFAEVDHELEQQQDNIDSFYSGTTALTLVRQASNNWNHRGTTANVGDSRAI LATTSEDGGSLVPVQLTVDFKPTLPEEAKRILECKGRVFSLEDEPGVERVWLPHEESPGLAMSRAFGDYCIKDFGLISEPEVTLRHISDRDRFVILATDG VWDVITNQEAIEIVLSVSDQSKAAECLVKAAASGWRKRRKGIAMDDISVVCLFLHHHLPTICKQVVSVARKMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27930			Protein phosphatase 2C family ...		Lus10015206 [exp]	0	1
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Lus10011396 [exp]	2.4	0.7964
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	2.6	0.8265
AT5G14360			Ubiquitin-like superfamily pro...		Lus10022315 [exp]	2.8	0.8103
AT4G08520			SNARE-like superfamily protein...		Lus10037624 [exp]	7.3	0.7773
AT1G30630			Coatomer epsilon subunit (.1)		Lus10023385 [exp]	7.7	0.7957
AT3G10330			Cyclin-like family protein (.1...		Lus10031055 [exp]	8.8	0.7634
AT2G44600			unknown protein		Lus10043351 [exp]	9.2	0.7624
AT1G63220			Calcium-dependent lipid-bindin...		Lus10029565 [exp]	12.4	0.7553
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10016102 [exp]	12.5	0.7169
AT3G61260			Remorin family protein (.1)		Lus10039215 [exp]	14.5	0.7635

Compare expression of checked genes

Lus10015206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.