Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05625 335 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031474 [exp] 505 / 0 AT3G05625 342 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001552 [exp] 249 / 1e-84 AT3G05625 203 / 1e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031484 [exp] 115 / 5e-30 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012400 [exp] 379 / 5e-134 AT3G05625 357 / 3e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015207 pacid=23149501 polypeptide=Lus10015207 locus=Lus10015207.g ID=Lus10015207.BGIv1.0 annot-version=v1.0 ATGGTGGCGACCCAGATCAACAAATTCCCATTACCCTGCCATTATACACCTTCATCTGCTTCGTTTCCGTATACCCTAATCAGATCTCGCGAATCCCTCC AATTTGTTCCTCACGGACTTCCCAAATTGACCAGAAGACTGTTCCTTCCTTCCGTTTCCGGGATCTGGGACGCAATCACCGGCGGCGGCGGAGGGGACAA ATCCCGGGAAGCTTCTCTCGCCGTCCGGCGAGGAATGCTGCTCTTCCGACAAGGAGATGTGTTGGGTTCTGTAGTGGAGTTCGACAAAGCGATTGAGTTG GATCCTCGTCAAAAGGCATATATGTGGCAAAGGGGTTTATCACTTTACTATCTGGATAGGTATGAAGAAGGGGCAGAGCAATTCAGGATAGATGTTGCAA TGAACCCAAATGACACTGAGGAGTCAATATGGTGCTTTCTCTGTGAAGCTCAGTTGTATGGAGTTGCTGAGGCAAGGAAGCGATATCTCGAGGTTGGTAG AGATCCTAGGCCAGTTATGAGAGAAGCTTACAACATGTTCAGAGATGGTGGGGATCCTGAAAAGCTTGTTGCTGCATTTTCGAAAGGCGGCGGACCCAAC GAGTACTTCTATGCTTCATTATACGCAGGATTATACCATGAATCACAGAAGGAAGCAGATGCAGCTAAGCTTCATCTAGTTGCAGCTTGCAAGTCTCTTT ATGGACAAAGATCTGATGACTACATGGCTTCTCTTGCTAAGGTTCACTGTCAATGTAGAAATTGGAGCATTGACTGA
AA sequence Show only first row Show all	>Lus10015207 pacid=23149501 polypeptide=Lus10015207 locus=Lus10015207.g ID=Lus10015207.BGIv1.0 annot-version=v1.0 MVATQINKFPLPCHYTPSSASFPYTLIRSRESLQFVPHGLPKLTRRLFLPSVSGIWDAITGGGGGDKSREASLAVRRGMLLFRQGDVLGSVVEFDKAIEL DPRQKAYMWQRGLSLYYLDRYEEGAEQFRIDVAMNPNDTEESIWCFLCEAQLYGVAEARKRYLEVGRDPRPVMREAYNMFRDGGDPEKLVAAFSKGGGPN EYFYASLYAGLYHESQKEADAAKLHLVAACKSLYGQRSDDYMASLAKVHCQCRNWSID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10015207 [exp]	0	1
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10004200 [exp]	2.0	0.9428
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031869 [exp]	4.2	0.9324
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	6.6	0.9326
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Lus10036207 [exp]	6.9	0.9267
AT2G34860		EDA3	embryo sac development arrest ...		Lus10023593 [exp]	8.5	0.9292
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10028133 [exp]	8.8	0.9014
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10035926 [exp]	8.8	0.8853
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Lus10034892 [exp]	12.0	0.9203
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10022507 [exp]	14.5	0.9280
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	16.5	0.9174

Compare expression of checked genes

Lus10015207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.