Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09155 231 / 3e-75 ATPP2-B15 phloem protein 2-B15 (.1) AT1G56240 213 / 3e-68 ATPP2-B13 phloem protein 2-B13 (.1) AT1G56250 213 / 7e-68 ATPP2-B14 phloem protein 2-B14 (.1) AT2G02360 169 / 3e-51 ATPP2-B10 phloem protein 2-B10 (.1) AT5G24560 157 / 9e-47 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02240 157 / 4e-46 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02230 152 / 9e-44 ATPP2-B1 phloem protein 2-B1 (.1) AT1G80110 145 / 3e-42 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02340 146 / 5e-42 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02250 146 / 8e-42 ATPP2-B2 phloem protein 2-B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031484 [exp] 462 / 3e-165 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1) Lus10031473 [exp] 400 / 3e-142 AT1G09155 228 / 1e-74 phloem protein 2-B15 (.1) Lus10015209 [exp] 387 / 2e-136 AT1G09155 209 / 1e-66 phloem protein 2-B15 (.1) Lus10020674 [exp] 339 / 1e-117 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10020673 [exp] 335 / 8e-116 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10029872 [exp] 334 / 2e-115 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10031472 [exp] 291 / 9e-100 AT1G09155 177 / 4e-55 phloem protein 2-B15 (.1) Lus10018171 [exp] 183 / 1e-55 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10025666 [exp] 178 / 1e-53 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022000 [exp] 299 / 1e-101 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 278 / 3e-93 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.018G015800 [exp] 186 / 2e-57 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 179 / 2e-54 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G267000 [exp] 178 / 4e-54 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G266900 [exp] 166 / 1e-49 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 159 / 8e-47 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.001G050100 [exp] 154 / 2e-45 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012666 [exp] 132 / 6e-38 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1) Potri.012G120400 [exp] 88 / 5e-20 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015208 pacid=23149521 polypeptide=Lus10015208 locus=Lus10015208.g ID=Lus10015208.BGIv1.0 annot-version=v1.0 ATGTCGACGGTCAACGTCCACTCCCTCCCGGAAGACTGCCTCTCTGCAATCCTCTGTTTCACTTCCCCACAGGACGCCTCCCGCTCCTCCGCCGTCTCCG CCGCCTTCCACTCCTCTGCCGACTCCGACGCAGTCTGGCACAATTTCCTCCCCTCAGACTACCCCCGCATTGTCTCCGAATCGATCCCGCCCCTCGAATT CTCCTCAAAGAAGGAGCTTTTCCACCTCCTCTGCGACTCTGTTCTCGTCGACGGCGGACTCAAAATGTTCAAGCTTGAGAAATCTACTGGGAAGAAAAGC TACGTACTTTCCGCGAGGGATCTCTCAATAACATGGAGTAACGAACCGTTGTACTGGTCTTGGACTTCCGATTCGGAATCAATGTTTCCGGAAGTGGCGA TGCTAAGGACAATGTCATGGCTGGAGATCGACGGTAGGATCAACACTGGAATGCTGACGGCGAATACTAAGTATGGAGCGTATCTGTTGATCAAAATAAC GGATAGGTCGTACGGTCTGGATTCGATGGCGACGGAGGTGTCGGTTCGAGTGGGTGGTAGTGAAGCCTGTAGTAGTGGAACGGCTTACCTGAGGCGCAAG CGAAACGAGACAGTTTCGATGATGGAGCGATGTGTGGAGCTGCTGATGTACGGACACCGGACGGAGGTGTCGAAACTGTCGAGGGTGGCCGCGGCCGGAG GAGGGGAAGGGAGGTTGCCGGAGGAGAGGGGAGATGGGTGGTTGGAAGTTGAGATTGGTGAGTTTTGGAGTGGGGAAAGAGATGAAGAAGTTAGGATGAG TTTGAAGGAAGTGAAGGGTTACCATTTGAAAGGGGGACTTGTTGTTCAAGGTATTGAAGTTAGGCCTAAACCCTAA
AA sequence Show only first row Show all	>Lus10015208 pacid=23149521 polypeptide=Lus10015208 locus=Lus10015208.g ID=Lus10015208.BGIv1.0 annot-version=v1.0 MSTVNVHSLPEDCLSAILCFTSPQDASRSSAVSAAFHSSADSDAVWHNFLPSDYPRIVSESIPPLEFSSKKELFHLLCDSVLVDGGLKMFKLEKSTGKKS YVLSARDLSITWSNEPLYWSWTSDSESMFPEVAMLRTMSWLEIDGRINTGMLTANTKYGAYLLIKITDRSYGLDSMATEVSVRVGGSEACSSGTAYLRRK RNETVSMMERCVELLMYGHRTEVSKLSRVAAAGGGEGRLPEERGDGWLEVEIGEFWSGERDEEVRMSLKEVKGYHLKGGLVVQGIEVRPKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015208 [exp]	0	1
AT1G58420			Uncharacterised conserved prot...		Lus10012496 [exp]	1.4	0.9756
					Lus10005525 [exp]	1.4	0.9812
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015209 [exp]	3.5	0.9569
AT1G65690			Late embryogenesis abundant (L...		Lus10007364 [exp]	4.5	0.9620
AT4G34150			Calcium-dependent lipid-bindin...		Lus10014088 [exp]	5.1	0.9489
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	5.2	0.9549
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10031471 [exp]	5.7	0.9550
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031473 [exp]	6.5	0.9484
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10039911 [exp]	8.1	0.9377
AT1G74360			Leucine-rich repeat protein ki...		Lus10015729 [exp]	10.0	0.9531

Compare expression of checked genes

Lus10015208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.