Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09155 185 / 2e-57 ATPP2-B15 phloem protein 2-B15 (.1) AT1G56250 167 / 1e-50 ATPP2-B14 phloem protein 2-B14 (.1) AT1G56240 163 / 5e-49 ATPP2-B13 phloem protein 2-B13 (.1) AT2G02360 146 / 2e-42 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02230 135 / 7e-38 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02240 132 / 1e-36 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02250 127 / 1e-34 ATPP2-B2 phloem protein 2-B2 (.1) AT5G24560 125 / 1e-34 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02340 123 / 2e-33 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02310 118 / 2e-31 ATPP2-B6 phloem protein 2-B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015208 [exp] 387 / 1e-136 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10031484 [exp] 379 / 1e-132 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1) Lus10031473 [exp] 375 / 1e-132 AT1G09155 228 / 1e-74 phloem protein 2-B15 (.1) Lus10031472 [exp] 286 / 3e-98 AT1G09155 177 / 4e-55 phloem protein 2-B15 (.1) Lus10020674 [exp] 281 / 6e-95 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029872 [exp] 276 / 4e-93 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10020673 [exp] 272 / 2e-91 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10018171 [exp] 155 / 5e-45 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10025666 [exp] 145 / 2e-41 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022000 [exp] 235 / 5e-77 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 211 / 9e-68 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.018G016000 [exp] 149 / 3e-43 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G266900 [exp] 147 / 1e-42 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 142 / 1e-40 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G267000 [exp] 141 / 4e-40 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 137 / 5e-39 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.001G050100 [exp] 128 / 2e-35 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012666 [exp] 103 / 6e-27 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1) Potri.012G120400 [exp] 77 / 3e-16 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015209 pacid=23149526 polypeptide=Lus10015209 locus=Lus10015209.g ID=Lus10015209.BGIv1.0 annot-version=v1.0 ATGTCGACGGTCAACGTCCACTCCCTCCCGGAAGATTGCCTCTCTGCAATCCTATGTTTCACTTCCCCACAGGACGCCTCCCGCTCCTCCGCCGTCTCCG CCGCCTTCCACTCTGCTTCCGACTCCGACTCCGTATGGCACAACTTCCTCCCCTCAGACTACCCCTGCATTGTCTCCGAATCGATCCCGCCCCTCGAATT CTCCTCAAAGAAGGAGCTTTTCCACCTCCTCTGCGACTCTGTTCTCATCGATGGCGGACTGAAAATGTTCAAGCTGGAGAAATCAACTGGGAAGAAAAGC TACGTACTTTCCGCGAGGGATCTCTCAATAACATGGAGTAACGAACCGTTGTACTGGTCTTGGACTTCCGATTCGGAATCAATGTTTCCGGAAGTGGCGA TGCTAAGGACAATGTCATGGCTGGAGATCGACGGTAGGATCAACACTGGAATGCTGACGGCGAATACTAAGTATGGAGCGTATCTGTTGATCAAAATAAC GGATAGGTCGTACGGTCTGGATTCGATGGCGTCGGAGGTGTCGGTTCGAGTGGGTGGTAGTGAAGCCTGTAGTAGTGGAACGGCTTACTTGAGGCGCAAG CGAAACGAGACGGTTTCGATGATGGAGCGGCTGATGTACGGACACCCGACGGGGGGGGCGAAACTGGGGAGGTGTCGAAATTGTCGACGGTTGCCATGGC GGGAGGAGGGGAAGGGAGGTTGCCGGAGGAGAGGGGAGATGGGTGGTTGGAAGTTGAGATTGGTGAGTTTTGGAGTGGGGAAAGAGATGAAGAAGTTAGG ATGA
AA sequence Show only first row Show all	>Lus10015209 pacid=23149526 polypeptide=Lus10015209 locus=Lus10015209.g ID=Lus10015209.BGIv1.0 annot-version=v1.0 MSTVNVHSLPEDCLSAILCFTSPQDASRSSAVSAAFHSASDSDSVWHNFLPSDYPCIVSESIPPLEFSSKKELFHLLCDSVLIDGGLKMFKLEKSTGKKS YVLSARDLSITWSNEPLYWSWTSDSESMFPEVAMLRTMSWLEIDGRINTGMLTANTKYGAYLLIKITDRSYGLDSMASEVSVRVGGSEACSSGTAYLRRK RNETVSMMERLMYGHPTGGAKLGRCRNCRRLPWREEGKGGCRRRGEMGGWKLRLVSFGVGKEMKKLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015209 [exp]	0	1
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10025989 [exp]	1.0	0.9740
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015208 [exp]	3.5	0.9569
					Lus10010270 [exp]	7.5	0.9504
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10007910 [exp]	8.1	0.9563
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10039911 [exp]	11.8	0.9316
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10015221 [exp]	12.2	0.9548
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10041951 [exp]	12.7	0.9452
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10014227 [exp]	13.0	0.9327
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	14.1	0.9479
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10030659 [exp]	17.0	0.9039

Compare expression of checked genes

Lus10015209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.