Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02330 539 / 0 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 514 / 9e-178 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 491 / 5e-169 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04970 446 / 2e-150 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 445 / 3e-150 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT2G26440 384 / 3e-127 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 368 / 2e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 365 / 9e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 360 / 1e-117 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 359 / 1e-117 ATPMEPCRA methylesterase PCR A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031470 [exp] 1007 / 0 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029867 [exp] 495 / 9e-172 AT4G02330 352 / 3e-116 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 487 / 4e-161 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028882 [exp] 413 / 4e-138 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008937 [exp] 407 / 7e-136 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Lus10010309 [exp] 397 / 6e-133 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 384 / 1e-127 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 367 / 1e-120 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 366 / 3e-120 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022800 [exp] 586 / 0 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G127000 [exp] 564 / 0 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202600 [exp] 550 / 0 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.008G011100 [exp] 476 / 1e-162 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.010G247700 [exp] 413 / 2e-138 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.002G202500 [exp] 407 / 3e-136 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134600 [exp] 386 / 3e-128 AT2G26440 683 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 375 / 1e-124 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 374 / 1e-123 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 373 / 2e-122 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10015210 pacid=23149545 polypeptide=Lus10015210 locus=Lus10015210.g ID=Lus10015210.BGIv1.0 annot-version=v1.0 ATGGCGGTTTCCCCTACTCCCAAGCTACTTCCAATCTTCTTCATTCTCTTATCCATTTCCCCTGCATTTCCCCTACCTGCAACACCAGACAACTTCTGTA ACACAACTCCATTCCCATCATTCTGCAGATCCACTCTGCCATACACCGAAAACACCTCGATCCACGACTACACCCGGAAATCGGTCCACCAATCTCTATC GCAAGCCAGACAGTTCCGCCGATTAATCAACTACCTTCTCAAGCGAGCTTCGAAATCGAAAACCTTCACAACCCTCGTCCCGCCCCTTCAGGATTGCCAG TTCCTCGCTCAGTCAAACTTCGACTCACTCTCCAACACAATGTCTGCCATCAGATCGAAAGACAAGCTCCAAACTTTCCAAACCAGTGACTTGCAAACCC TTCTCAGTGCCACATTGACAAATCTCGACACTTGTCTTGATGGGATTCGTTCGGACAACTCCGATGTCATTAACTCCCTCGTGGCGCCTTTGCTGAAAAA TGGGACCAAGTATTGTAGTGTGTCACTGGCACTCTTTGCCAAAGGTTGGGTTCCTCCTCCGAAGAGGAAGAATCCAACCTTTTCGCATGAATTAGCGACT TTGGATTTGTCTAATGGGTTGCCACTGGCGATGTCGGGTCAGGACCGGAGTTTTTTTGAGTCGATTAGCGGGATGAAGGTTAAGGAGACAACGGGTTGGG GAGGTGGAGGGGTGTTGGTGAGCAAGATGGTTGTTGTTAGCAAGAAGGGAGGAGTTGGGAACTTCACTACCATCAATGAAGCTATCGAATCGGCTCCAAA TTCGACGGCTCGACATGGCTACTTTGTTATTTATGTAACGGAAGGTTACTATGAAGAGTACATTTCCATTCACAAGAAGAAGCATAACTTGATGATGATC GGAGATGGAATTGGTAAGACTACCATATCCGGTAATCGGAGTGTTGTCGATGGTTGGACCACTTTCAACTCCTCAACATTCGCCGTGACGGCTCAAGGAT TTGTGGCGGTCGGGATAACGTTCAAAAACACGGCTGGACCGGAGAAGAGGCAAGCGGTCGCGGTAAGGAATGGTGCCGACATGTCGGCGTTCTTTAATTG TAGTTTCCAGGGGTACCAAGACACGCTCTACGTCCACTCGTTCCGGCAATTCTACCGCGACTGTGAGGTCTACGGCACAGTCGACTTCATCTTCGGAAAC GCCGCCGCAGTGTTCCAGAACTGTCGGATCATGAGCCGGCTCCCGATGGCCCACCAGTTCAACGCGATCACGGCTCAGAGCCGGACCGATCCGAATCAGA ACACGGGGATCTCGATCCAGAACTGTAGCATCAAGGCCGCGAAGGACCTTGCGGAGAGCAACAGGACCACGAGGTCTTACCTCGGCCGTCCGTGGAAGGC GTATTCGAGGACGGTGGTGATGAACTCATACATCGCCAGCTTTCTCGACCCGGCGGGGTGGTCCCCGTGGTTCGAGAACGATTCGCTGAGCACGCTTTAC TACGCGGAGTTCAACAACTCTGGGATCGGGTCTATGACGGGCGGGAGAGTGGACTGGCCTGGGTTCAGGTTGATTAACGAGACAGAGGCCGAGAATTTCA CGGTGGCGAATTTTAACCAGGGTGATGTTTGGTTGCCAGCGACCGGCGTACCTTTCGCAACCGGTTTGGTACAGTAA
AA sequence Show only first row Show all	>Lus10015210 pacid=23149545 polypeptide=Lus10015210 locus=Lus10015210.g ID=Lus10015210.BGIv1.0 annot-version=v1.0 MAVSPTPKLLPIFFILLSISPAFPLPATPDNFCNTTPFPSFCRSTLPYTENTSIHDYTRKSVHQSLSQARQFRRLINYLLKRASKSKTFTTLVPPLQDCQ FLAQSNFDSLSNTMSAIRSKDKLQTFQTSDLQTLLSATLTNLDTCLDGIRSDNSDVINSLVAPLLKNGTKYCSVSLALFAKGWVPPPKRKNPTFSHELAT LDLSNGLPLAMSGQDRSFFESISGMKVKETTGWGGGGVLVSKMVVVSKKGGVGNFTTINEAIESAPNSTARHGYFVIYVTEGYYEEYISIHKKKHNLMMI GDGIGKTTISGNRSVVDGWTTFNSSTFAVTAQGFVAVGITFKNTAGPEKRQAVAVRNGADMSAFFNCSFQGYQDTLYVHSFRQFYRDCEVYGTVDFIFGN AAAVFQNCRIMSRLPMAHQFNAITAQSRTDPNQNTGISIQNCSIKAAKDLAESNRTTRSYLGRPWKAYSRTVVMNSYIASFLDPAGWSPWFENDSLSTLY YAEFNNSGIGSMTGGRVDWPGFRLINETEAENFTVANFNQGDVWLPATGVPFATGLVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10015210 [exp]	0	1
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030900 [exp]	3.2	0.9224
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10001833 [exp]	7.5	0.8899
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	12.3	0.9198
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10015545 [exp]	15.3	0.9123
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10034836 [exp]	16.9	0.9056
AT1G09640			Translation elongation factor ...		Lus10007148 [exp]	21.4	0.9104
AT1G09640			Translation elongation factor ...		Lus10002537 [exp]	31.6	0.9005
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10031348 [exp]	33.8	0.8814
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038635 [exp]	33.9	0.8883
AT1G73600			S-adenosyl-L-methionine-depend...		Lus10009056 [exp]	37.6	0.8511

Compare expression of checked genes

Lus10015210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.